Pmar011392.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- bab2
- Assembly
- GCA_900065295.1
- Location
- FIZT01059767.1:14741-17756[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 1.3e-08 34.6 0.0 1 39 475 514 475 518 0.90 2 4 1.4e-11 1.1e-08 34.8 0.0 2 39 530 567 529 570 0.92 3 4 8.8e-19 7.2e-16 57.9 0.0 1 45 584 629 584 629 0.97 4 4 1.2e-16 9.8e-14 51.0 0.1 2 43 637 679 636 680 0.95
Sequence Information
- Coding Sequence
- ATGGCCAACATCGGACAACATTACTGTTTACGATGGAATAATTATCAGTCGAACATGACGTCGGTGTTTTATCAACTGCTACGTACCGGAGCTTTCGTCGATGTGACATTGACTTGTAATGACAACTCTCTAAAAGCTCACAAGGTCGTTTTATCTGCGTGttcttcgtattttcaaaaactactcACAGATAATCCGTGTAAACATCCGACCATAATACTGCCGCAGGAAGTTGGCTTcaatgatttgaaattcatcatcgATTTCGTATACCGTGGCGAAATCAACGTTTCAGAAGCCGAGCTACAGTCTTTGCTGAAAACGGCAgatcatttgaaaatcaaaggaTTATGCGAAGTGCCAGAAGGCGAAGAAGACGACATGGATGAGACTGGGTGCGGCGAATCGGTAACAGACGTTAGCGTTCTAGGAGCTCATATGATGATGATGCACGATAAATCGTCGCCGCAAAAACAACACAAAATACTCGCCAAATTGAAACCAGCCGTACAACGATTTTCGGCAAATATAAAACGAAAACATCTGCCGCAAGATGTCAACAGTACGAGAAAATATTATATCAAAGATACCAAGACCAACACCGGTGCTCAAGTAGAACAAGGATCAGTACAACTGATACAGTCCAGTACTATAAATCCTAACGATATTTTAAATACGACGAATAATACTCCACAATACCACAACATGCAACCGTCGACCAACTGCATAACTGTAGCAACCTCAACAGACGAAGACGACAAATCAACGGCCAACAACGTACCTGTAGTTATATTAGATAATCGACATCAGCAACAAATGTCTACAACAGTTCATTCGTCTTTACATTACATTCAAGAAAGCaatcagcagcagcagcaacaacaacgatgccaacaaaacgaaaaaattatcatgacTAGTCCATCGCCAATGATGTCTTCCTGTACTACACTAACAACTTTACAGCCTCAGCAAtCTTTACTTTTAGATCGAAATAGTCATCACCTTGGACCAACGCCATCTCAGATGTCAAATCCCGAAGATAAACAAACAGACGTGGAAATGATCTCAGAAGGGCAGCCTCCAGGACCTACGGCTACTCCAGTACATTGCCATTCGTTGGAAATGCAACAGCATAGTCCAACCCACAGAGATATCGCTGTTGATACTTCTAGTATGCAAACGGACGACATGAAAGTTAAATTTGAAACGTTGAGGACCATGGATCAGACTTCAGATAGCATGGATACGATCGAGAATCATATGTCTGAGCACAGTATGAACGACGACGAGCATACAATGCAAACGATGATGATCACTCCAGAATTACTAGGACTAATACCGTCCACTTCATCTGCACCTTCTTCCGAAGTCGGCAGTGATAACGGTAAAAATAACATGACTTTGTCTAAAAAAGATTGGACCCAGGAAGACATGGACGCGGCGTTGGACGCTCTCCGAAACCATCACATGAGTTTAACCAAAGCTTCCTTGACGTTCGGTATTCCATCGACAACTTTGTGGCAAAGAGCGCACAGACTCGGTATAGATACTCCGAAAAAAGACGGTCCTTCAAAATCTTGGAACGAAGATGTCCTTAACGTTGCTCTCGACGCGTTACGAACCGGATCTCTGAGCGCGAATAAAGCTAGTAAAGCTTACGGTATTCCTAGTAGCACTTTGTATAAAATAGCCAGACGTGAAGGTATACGATTGGCAGCGCCGTTCAACGCAGCTCCAACAGCTTGGACACAAGATGACTTGGAAAGAGCTTTGGAAGCTATCAGGACCGGACAAACGACCGTTCAGAAGGCAGCTACCGAATATGGTATTCCAACCGGTACACTTTACGGACGATGTAAACGagagaaaatcgaattatctCGTAGTAATCCCACACCTTGGTCTCAAGACGCCATGTCCGAAGCTTTGGAAGCCATCAGATTAGGCCAAATGAGTATTAATCAAGCTTCTATACACTACAATTTGCCGTATTCGTCGTTATACGGTAGATTTAGAAGAGGTAAATACGAAGCCGATCATCTAGATCACGAAGACGATAACACCACCGGAATTGTGGTCGATGTCCAACCCGGTGGCAgtcaacagcagcagcagatGGTACAACAGTCTCACCCTAGCGAAATGCAGCAACCCGAGCCTAGCTCTTCGCAAGCCCAGCAGCCAACAGCTATTCAGCCGCAGATCATGCTGTTGCAATATCAACATACTCCAGCTACACATATCCAAATGTATCAACCGGCTGCGCCCAGTTGA
- Protein Sequence
- MANIGQHYCLRWNNYQSNMTSVFYQLLRTGAFVDVTLTCNDNSLKAHKVVLSACSSYFQKLLTDNPCKHPTIILPQEVGFNDLKFIIDFVYRGEINVSEAELQSLLKTADHLKIKGLCEVPEGEEDDMDETGCGESVTDVSVLGAHMMMMHDKSSPQKQHKILAKLKPAVQRFSANIKRKHLPQDVNSTRKYYIKDTKTNTGAQVEQGSVQLIQSSTINPNDILNTTNNTPQYHNMQPSTNCITVATSTDEDDKSTANNVPVVILDNRHQQQMSTTVHSSLHYIQESNQQQQQQQRCQQNEKIIMTSPSPMMSSCTTLTTLQPQQSLLLDRNSHHLGPTPSQMSNPEDKQTDVEMISEGQPPGPTATPVHCHSLEMQQHSPTHRDIAVDTSSMQTDDMKVKFETLRTMDQTSDSMDTIENHMSEHSMNDDEHTMQTMMITPELLGLIPSTSSAPSSEVGSDNGKNNMTLSKKDWTQEDMDAALDALRNHHMSLTKASLTFGIPSTTLWQRAHRLGIDTPKKDGPSKSWNEDVLNVALDALRTGSLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWTQDDLERALEAIRTGQTTVQKAATEYGIPTGTLYGRCKREKIELSRSNPTPWSQDAMSEALEAIRLGQMSINQASIHYNLPYSSLYGRFRRGKYEADHLDHEDDNTTGIVVDVQPGGSQQQQQMVQQSHPSEMQQPEPSSSQAQQPTAIQPQIMLLQYQHTPATHIQMYQPAAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01262654;
- 90% Identity
- iTF_00194509;
- 80% Identity
- iTF_01150541;