Pxut002484.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:293498-316565[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 1.2e+02 3.2 0.2 1 23 183 205 183 205 0.76 2 13 0.0071 0.41 10.9 0.4 3 23 296 317 295 317 0.95 3 13 0.073 4.2 7.7 2.1 1 21 354 374 354 375 0.95 4 13 6.8 3.9e+02 1.5 4.8 2 23 381 401 380 401 0.90 5 13 0.016 0.9 9.8 1.2 3 23 791 811 790 811 0.92 6 13 0.0043 0.24 11.6 0.4 2 23 817 838 816 838 0.95 7 13 0.26 15 6.0 0.8 5 23 929 947 926 947 0.90 8 13 0.54 31 5.0 0.0 2 23 964 985 963 985 0.95 9 13 2e-05 0.0012 18.9 5.1 1 23 991 1013 991 1013 0.99 10 13 0.01 0.58 10.4 0.3 1 23 1018 1040 1018 1040 0.97 11 13 4.1e-05 0.0023 18.0 2.7 2 23 1047 1069 1046 1069 0.96 12 13 0.18 11 6.5 2.1 1 20 1074 1093 1074 1097 0.93 13 13 0.00064 0.037 14.2 0.3 3 23 1106 1127 1105 1127 0.97
Sequence Information
- Coding Sequence
- ATGGAAGACAATTCACAGATTGCGTTCAACGTAAATGTCAAAGTGGAAAAAATAGAGGATGAAAACACacaagaaacaaatgaaattaatgaaaacacTGACAATATTTGTACAGTGAACACAAGAGATAACAAAAAGACATTCTACACTCAAGTTATTAGTATAGATGATTCCGAAGATGAGAATACTAATTCCGCTACAGAAGAGTCAATATGTAACCGAGAGGATAATTTGTGTGAATTTCCATCAAGCAGCGGGATACATAATGAAACAAGTAATGACTTAGAGAATGATAAGAAATTCTATATCATTCAAAAGAATACGTTACATACATTAACAAAAGAAACGATATTCAAAGGTATCGAAGAGCAATCAAGattgttagaaattaaatcTGATTTCCTTCTAAATGATATCATAAGAAATtatcatcaaaaatattataatccaACACGAACTATACATGAGAATTTATTGGATAAAGCCCTTGAATTATGGAAAAAttggtataataattttccGAGAGTCAGAAATACAcctgttttatacaaatgttacatttgtaataaagGATGGTGGAGATTAGATCCGTTCAgacaacatattataatacataaacatccaaatttaataataacccTCGAAGAAATCGGTCaagaatcaaatataatagcaAGTATTGGTTTtcctaagaaaaataaattagtcacAGTGAATTCAAACTGTTGGAAATGTAATAAACCTTTATGGAATCATGCATTGACTAGATACTCCCCGGAGATATACAGTTGTAAGCTATGTAAGATGCAATTATATACATGTTTGGGTTTATCTCAACACGAAACAACATGTaaggttaatttaaatgacagCACAAGAATGTTATGTACTATATGTACTATGTATTATTCCACtgaagataaattatataggcatatgattttatatcattCACCTAAATCAGATGAACCAGCGATAACGAATcctaaaatatgtaatttatgcGAAGAgaagttttatatatcatcATACCATGATTGTCCGAAGCGgcctaaattatataaatgtcaatattgctggaataaatatatatcaaagacatttttacatttacatatgtctatgaataaaaatttcagCACATGTCTGGATTgtttgaagaaatttaaacagtgttatttaattgaacATTTGTTGCACCATTCGAGGAATTATCAAGTGgtacaatattgtttaaaatgtaaaaataatgtgCTTTATCTTGAcaatgaattgtttttaactcATATGATTAATCATGGAAATTCTACGCTAAGAAGACGTTATACTATAAAgACGATGTTACCTTTGAAATGCATAAAGGGCGAGATAGCTGACAATGTAATACCGCTACAAATATATGataaactgctatataaatatcttgcagatgtagaatatatgaattattcaccaattaaaataattgcctTAATAAAGAGGAATAAATCAAAACTATGTAtagaagattataaaattaaaaaaacaacagagAAAACATACacagaaataacaaatgaagAAATTCAGAATACTCCGGAGCATGATGAAACCGAGGCAACAGAgactaacaatataattaaaaatgatgcAGATTCTGATTATGAACCAGATAGTTATGCAATTGAAACGCAATTAGatgcagaaataaaaagagataTAGAAATTGAAGAGCAAATATCGAAAGTGTTCAAAGCATCCAaatgttataagaaatttCTTGATAAAGAAGCCAGTGATCCGATTGAAGATATTTATGACAATGATGTTtgtataattgttaaaaatgaagaaactTTAGTTATTTCAGATTCAGATGATGAGAAAACTTTGGAATTAAATGATGGAAAAGATAAAGGGAATCCTAATATTGATATGGAAAGAGTTGGATCGGATGTTGATATATTagaatctaattttaataatgttacagtgaaaatagaaaattgtgattttaatgAAGAGAAATCTAATAATAGCGTTGAATTTAAACACGAATATGTTGAAAgtatgaaacatataaaaaaagaagattccataaaagaagaatatgaagatgTAACAGATGGAGTTATGGATTTTTTCAATGGTGTTAACTTAGATTTCAATACAAACGTTAAATCTGAAACTTGTACGAACGAATGCGATATAGATTTAAACGATTGGaagataaatgaaatatccagtattaaaaagagaaaaatagtaaaaaatacaaaaagaacgTGGAAATATGATTTGACAACTTATTTTTGCTCGGACTGTACATATAAAGGATGTTATAAAGACTACATCAATCATTTAACAAGatgtaaaaagaaacatcCTAATTGTACTTATTGTAAGAAGACATTTGACAATATCGATGaatatttaacacatttcACGGAACATAAGTTGAGATATCTCTCATGTCCGCAGTGTTTGAAGAATTTCACATTATTACGTTACCTTAATaatcatataatattacatataaacGAATTATTCGTTAATATACCAAATGAAAGGGAacaatatattgaaaataagcCGTATATATGTTTGTTGTGCGAAGAATTGGttgatattgataattttttcacACATTGGGAATCACATTTGGAATTAAACGAGGGTGGTGTTGCGGATGAAATGTCAGACGGTGAGGGTGATATGAAAAGTATGATGTCACCGGAAATGGTTGAACAAGCTTTAGAAATCCTATTGGACAATGCAAGAAATAGTAAGAACAAAGTATGCATTGTTTGCTCCAAAAACTTTTCAAGGAAGAACGACAGTAAGCGACATTTGATTGAACACTTATTACATGAAGCCAAAGTGAATATAGCTGAAACTAATGCAAAGTTACGTTGTCCAATGTGCAACGTGGACATCCGGGAGTTACCAGCATGGAGACAGCATATGCGGGATCATGCTCAACTAAAAGTGTATCGCTGTAGTTTGTGCCCTAAAAAGTTTTGTGATTCAAGTAACTATAGTAAACATAGGAAAGTGCATAaccaacataaatatatatgtgatTTGTGCGGTGGAAAGTTTTGTGCTAAATcaagtattataaaacatctcgcgGTCCATGAACCGATGAATCCGATGTCTTGTACTGAatgcaataaaacattgtgTTCAGAATACGCCTTGAAACGACATATGCGTGTTAGGCATTCGATGTATCAGTTTGCTTGTCCCGTATGTAAAAGGAAGTTCGGTACATGCAAACAGAGATGGGATCATATGTggaataaacataaaataagaaagttcGTAGCGGACTGTCccatttgtaataaacaatatagaaGAATTATTGATGTTAAAAATCATATGAAATCGGAGCATGgcataaaaaaaactgaagatttttataaaataagaaactcGAATGTGCAACGGAAGAAAAAGGCCGTCAACACGGAAATAACTAATCTTCCCGCTTGTAGTAAATAA
- Protein Sequence
- MEDNSQIAFNVNVKVEKIEDENTQETNEINENTDNICTVNTRDNKKTFYTQVISIDDSEDENTNSATEESICNREDNLCEFPSSSGIHNETSNDLENDKKFYIIQKNTLHTLTKETIFKGIEEQSRLLEIKSDFLLNDIIRNYHQKYYNPTRTIHENLLDKALELWKNWYNNFPRVRNTPVLYKCYICNKGWWRLDPFRQHIIIHKHPNLIITLEEIGQESNIIASIGFPKKNKLVTVNSNCWKCNKPLWNHALTRYSPEIYSCKLCKMQLYTCLGLSQHETTCKVNLNDSTRMLCTICTMYYSTEDKLYRHMILYHSPKSDEPAITNPKICNLCEEKFYISSYHDCPKRPKLYKCQYCWNKYISKTFLHLHMSMNKNFSTCLDCLKKFKQCYLIEHLLHHSRNYQVVQYCLKCKNNVLYLDNELFLTHMINHGNSTLRRRYTIKTMLPLKCIKGEIADNVIPLQIYDKLLYKYLADVEYMNYSPIKIIALIKRNKSKLCIEDYKIKKTTEKTYTEITNEEIQNTPEHDETEATETNNIIKNDADSDYEPDSYAIETQLDAEIKRDIEIEEQISKVFKASKCYKKFLDKEASDPIEDIYDNDVCIIVKNEETLVISDSDDEKTLELNDGKDKGNPNIDMERVGSDVDILESNFNNVTVKIENCDFNEEKSNNSVEFKHEYVESMKHIKKEDSIKEEYEDVTDGVMDFFNGVNLDFNTNVKSETCTNECDIDLNDWKINEISSIKKRKIVKNTKRTWKYDLTTYFCSDCTYKGCYKDYINHLTRCKKKHPNCTYCKKTFDNIDEYLTHFTEHKLRYLSCPQCLKNFTLLRYLNNHIILHINELFVNIPNEREQYIENKPYICLLCEELVDIDNFFTHWESHLELNEGGVADEMSDGEGDMKSMMSPEMVEQALEILLDNARNSKNKVCIVCSKNFSRKNDSKRHLIEHLLHEAKVNIAETNAKLRCPMCNVDIRELPAWRQHMRDHAQLKVYRCSLCPKKFCDSSNYSKHRKVHNQHKYICDLCGGKFCAKSSIIKHLAVHEPMNPMSCTECNKTLCSEYALKRHMRVRHSMYQFACPVCKRKFGTCKQRWDHMWNKHKIRKFVADCPICNKQYRRIIDVKNHMKSEHGIKKTEDFYKIRNSNVQRKKKAVNTEITNLPACSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -