Pxut014132.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:3135806-3139879[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.04 2.3 8.5 2.8 1 16 265 280 265 282 0.87 2 11 0.0021 0.12 12.6 1.5 3 23 360 381 359 381 0.97 3 11 0.00014 0.008 16.3 1.5 1 23 386 408 386 408 0.98 4 11 0.013 0.72 10.1 1.7 2 23 430 452 429 452 0.94 5 11 0.0047 0.27 11.5 1.0 1 23 456 479 456 479 0.97 6 11 0.091 5.2 7.4 0.3 2 23 502 524 501 524 0.90 7 11 0.0069 0.39 11.0 1.6 1 23 534 556 534 557 0.95 8 11 0.22 12 6.2 1.1 5 23 576 594 574 594 0.94 9 11 0.017 0.94 9.8 0.6 1 23 600 622 600 622 0.94 10 11 0.12 7.1 7.0 3.2 1 22 628 649 628 652 0.91 11 11 0.00011 0.0062 16.6 1.3 2 23 705 726 704 726 0.97
Sequence Information
- Coding Sequence
- ATGGAATCTAAAATAAACGgagGCGCAAGTATGTcatctgaaaataatttgcatgAAGCTTGCAATAATCAAGATTgtgaaacaattataaaacaagaatACAATGaagatatacaaataaaatgcgaaacaattgaaattgaaACTGCTGATAATTACgaaaatgtacaaattaaagaagaatacATATCACCTAATGAAAACGAACAACATACTAATTATGAAGTACTTACAtctaaagaaaatatgaatatgCTTAGTTTTTctatggaaaatattaaaaacgatgtAACAATAACCAATGTATATGatgataatattgaaattaaacatgAAAATGATATACAGGATGTCATGAATGACGATGATGGCAGTATGGACAGTAAACAGGCAGAAGCATTACATAATGTTGAGGCTTGTCTACaggatgaaattaaaattaaattagagaaTGAATCACATgagGATAATGAAAACAATGAATTAGATCATTTGGAGATAAAGAATGAATTTGATTCAATAGTTACtgaaactaatttattaataaatccaCAAGATGGTATCACAAATACACAAACAACAAACACCTTATTTATGGAAATATTGCCTATGAATATATACCAAGGCGTGCCACTTGGTAAAGTTTGTAATTCAGAAGAAATATTGTCCACATCCTATGACAATGCAATGGACTACACTGAttcttttcaattaaattcaataacgGGCAATATGATGTCATTAGAACAAGAAGCTTATGGACTTTTAGAAGCCAAAAGAACGGATAAGGTTTTCTCATGTTCCAAATGTCCGAAAACTTTCAAAAATTATGCATATTTTTCGAAAATACACGAAAAATATCACAGAAATATAGAGAAACGTGAATTATTGAAAGCAAAGaggttaaaaatgaaaaaggcgAAGATAGTGGATGAGGAAAAAGTGGTAAATAAAGTAGTACCCATACCCAATGACAATGGCTATGAATGCACTTGTGGTAAAATTTTCCAACGCAGGACACGATTGGAGTCTTGTCTACGTACACACAAAACAGAGAAGGAACTTGATTATTTGCTCTGTGGCACATGCTTTAAACAGTTCAAAGATAAGGAAGAATTGCTTTTGCACAGAAAACGAATGCATAGAAAGATTATGTTCCCGTGCAAATTTTGTCCCACAGATTACAAAAATCGGAaggaattatttaaacacttACAAATACATCAGAAAGTTCAAGTAATGGAATACAAGGTATTATCGGAAATAGTAAAAGGAAAACagaagttaaaatgttttatgtgcGCCAAAACTTGTACAGAACTGTCAGAATTAAAGTCTCACGTTATGTACGACCATAAGGAACCCTATGTGTGTCCGCATTGCAATGgcacattttcaaaaataatagattttgGTAATCATACAAAAACTGACCATCCCGAAGTAGAAGGCCAGTCTGTGTTGGATGTTTTAGAagcattttctaaattaattaaagcttGGAAGTGTGAAGATTGTGATGTACAATTTCACGAGGCGGATAAACTGGCGTTACATAAGATAGAAAAACATAGCGTAGATTTGAAAGTGGACCCACAATTCCAATGTATAGATTGCCGAAGGGTTTACATAACTCTTAAAGGATTAATGTCACATAGACGTATCCATCACATCACAGATAACATGGAAGATTCCGGAATGCCTGAAAAAGGAGTCCTGTGTATAGAATGTAGGAAGGTTTGCAGAGATATAGATGCATTAAGATCTCATAGTCGCCTCCATTCACCAAACAGAAAGTATCCTTGTAAATTTTGCGATTTTAGATTCGCATCACCCCAAAAGAGGAAAGCCCATGCGGAATTGCATACAGGTGAtatgaaatatgtttgtttcatTTGTGAATACAGATGCAGTTCTGAGAATCGATTAAATCAGCACAAGAAATCAGCGAAACACCTAACCATGAAGAATTTCTTGTCAAGTGGCAAAGCTTTAGGTATTGAGCAATCAACATCTAACACTGATCCGGAGAAACAGGAATGGATGGTGGTGAAAGGTGATGTAAACGATGAAGACAGTAATGATGAGTCGTCAAATACAGAAGCTATGATTACTTGCGATATTTGCGGtcaaacttttaaatcaatatataaaatgctgAAACACAAAAAGACTCATCCGTTCATTGAAATACCAAACGAGGATAAACCAACAaggatatttttcaaatag
- Protein Sequence
- MESKINGGASMSSENNLHEACNNQDCETIIKQEYNEDIQIKCETIEIETADNYENVQIKEEYISPNENEQHTNYEVLTSKENMNMLSFSMENIKNDVTITNVYDDNIEIKHENDIQDVMNDDDGSMDSKQAEALHNVEACLQDEIKIKLENESHEDNENNELDHLEIKNEFDSIVTETNLLINPQDGITNTQTTNTLFMEILPMNIYQGVPLGKVCNSEEILSTSYDNAMDYTDSFQLNSITGNMMSLEQEAYGLLEAKRTDKVFSCSKCPKTFKNYAYFSKIHEKYHRNIEKRELLKAKRLKMKKAKIVDEEKVVNKVVPIPNDNGYECTCGKIFQRRTRLESCLRTHKTEKELDYLLCGTCFKQFKDKEELLLHRKRMHRKIMFPCKFCPTDYKNRKELFKHLQIHQKVQVMEYKVLSEIVKGKQKLKCFMCAKTCTELSELKSHVMYDHKEPYVCPHCNGTFSKIIDFGNHTKTDHPEVEGQSVLDVLEAFSKLIKAWKCEDCDVQFHEADKLALHKIEKHSVDLKVDPQFQCIDCRRVYITLKGLMSHRRIHHITDNMEDSGMPEKGVLCIECRKVCRDIDALRSHSRLHSPNRKYPCKFCDFRFASPQKRKAHAELHTGDMKYVCFICEYRCSSENRLNQHKKSAKHLTMKNFLSSGKALGIEQSTSNTDPEKQEWMVVKGDVNDEDSNDESSNTEAMITCDICGQTFKSIYKMLKHKKTHPFIEIPNEDKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144867;
- 90% Identity
- -
- 80% Identity
- -