Basic Information

Insect: Papilio xuthus
Gene Symbol: -
Assembly: GCA_000836235.1
Location: NW:790070-796137[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00069 0.039 14.1 3.9 1 23 286 308 286 308 0.99

2 11 1.1 60 4.1 4.8 2 23 316 337 315 337 0.95

3 11 0.02 1.1 9.5 0.4 1 23 341 363 341 363 0.97

4 11 0.00084 0.048 13.8 0.9 1 23 368 391 368 391 0.98

5 11 0.0023 0.13 12.5 0.2 1 23 395 418 395 418 0.94

6 11 0.9 51 4.3 0.1 3 21 443 461 442 466 0.91

7 11 8.6e-05 0.0049 16.9 1.2 3 23 476 497 476 497 0.97

8 11 0.3 17 5.8 0.3 3 23 520 541 518 541 0.95

9 11 0.00012 0.0071 16.4 0.8 1 23 552 574 552 574 0.97

10 11 2e-06 0.00011 22.1 1.6 1 23 580 602 580 602 0.99

11 11 8.4e-05 0.0048 17.0 0.6 1 23 636 659 636 659 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00069	0.039	14.1	3.9	1	23	286	308	286	308	0.99
2	11	1.1	60	4.1	4.8	2	23	316	337	315	337	0.95
3	11	0.02	1.1	9.5	0.4	1	23	341	363	341	363	0.97
4	11	0.00084	0.048	13.8	0.9	1	23	368	391	368	391	0.98
5	11	0.0023	0.13	12.5	0.2	1	23	395	418	395	418	0.94
6	11	0.9	51	4.3	0.1	3	21	443	461	442	466	0.91
7	11	8.6e-05	0.0049	16.9	1.2	3	23	476	497	476	497	0.97
8	11	0.3	17	5.8	0.3	3	23	520	541	518	541	0.95
9	11	0.00012	0.0071	16.4	0.8	1	23	552	574	552	574	0.97
10	11	2e-06	0.00011	22.1	1.6	1	23	580	602	580	602	0.99
11	11	8.4e-05	0.0048	17.0	0.6	1	23	636	659	636	659	0.98

Sequence Information

Coding Sequence: ATGGAACACATAAAAGTGTGTAGGATATGCCTCGTAATGGATGTAAGCATGCACAATCTACAGGATTATCCTCTTGGAACctattttgaaaatgttacagGAATAAATCTCTTTAAGATAACAGATCTGCCTCCATTTGCTTGTTATGAATGTACAACACTTATCAAGAAGTTCAATAGTTTCCGAGAACGGTGTCTAAGAGGTCAGACTGCTCTCTATGGGATACTGCAAACATCTGGAAAGATATCAACTGAAGATGTAAAACAGATAGACAGAGATTATTTCCATTTGACATCTAATCTTGTATTCTCTAGTACAAAAACATGTGAAGACTTTTGCCTAAACTATGAAGattcaaagaaaaacattaaaaatgaaccATTTGAGCAAAtggataatattttagaatataatataGAATTGGACATAAACAGTATAAAGCAGGAAAgtaattttgatgattttggATCCTTGTCTATGTCCAGCGATGATAATGAACCGTTatctatacataaaaatggaaaagaaaagaaaggtaaattagttaaaaagaaaacaagaaaaaaaagaaacaatggaGAATGTTCTGAAATGTCAGAGAATAGTTTtggagattttttaaatgagACTGAAGAAAAGGATTCAACTATTGTACAAAGTCTCTTAGACACCAAACGTAAGAAgagaggaagaccaaagaaaaaCACAAAGCCAGAAAACAAACTCATAAAATACACAGATCACGAAGAAGATTTAGACATTGAGGAATATGTTACTGTAATAACACTATcgTTGGAGGAGCAAATAGAAGAGGTAAAGCAGCGGAAGACATCAAGCAACTATTTGAATTCCGCGTACAAATGCGATCTTTGTTACAAAGGTTTTATACACACTGATGCCTGGAACCACCACCTCAGGAAACATGATCCGAGTGCGGGGGACATGGAATGTTGTGTGTGCAAGTTCCGGTTCAAGACAAAAcgtattttattgaaacacACCTCCAACCATGAGAAGAAATACGCCTGCAAAGCCTGCTCATACGTCTCTAGGACACCGACACAAGCGAGACAACACCAGCGCTGGCACAAGGGGGTTACCTACAAGTGTCAATACTGCGATGAAATATCCACTAAATGGACGTCGTACTTGAGCCACGTGAGGATAAAGCATCCCTCGCAGCACATCTGCGGGGTTTGCGGGTACTCCTTCGTCAGCTCTCTGGGGCTCGCCATGCACCGCACCATGATGCACAAGGATCTAGACTTGgcaAAAGAGAAGTCGGTGAAGGTGACTGGTGATGAGGTCGAAGAGAAGAGTCGGTACTGCGCGGAGTGCGAGGTGCAGTTCATGTCGGAGGAGGCGTGGAAGCGGCACCTGGTCACCTCTGTCAAACATGTACCCTCATACATCTTCAAtaaCGGATGTCGTGTTTGCGGGGAAACATTCAATAATCCTGAAGAGCTACGAATTCACCATAGACAAAAGCACGCGCGGAAGAGACCCACTAACTACGGGAAGAAGCCTCCCAAACATGATAATAAGTGGCCTACTAACTGTGAACATtGTTCTGAAGAGATACCGAACGCCCGCGAGTACTGGGTCCACTTCCGGCGCGTTCACCCTGACAAGACCTACCCTATTGCGAAGAACCACATCTGTGACGTCTGCGGCAAAGGATTTAGgGGTAACGCGTTCCTAGCATACCACAAGCGCACGCATAGCGAGGAGCGCGCATTCAAATGCCCGCAGTGTCCAAAGGCGTTCCACAACCGCATCAATCTGCAGATGCATGCGCGCACGCATTCTGACGCGCGTCCTCATCCCTGCACCCTCTGCTGTAAGGCCTTCAAGTGCAAGGCCGCGCTCGACAGGCATACCAGGTGCCACACCGGTGTCAAACCATACGAGTGCGGTATCTGCGGCAAGGCGTTCGCGCAGTCCAATAGCTGTAAGCTGCATGTACGCACCGTACATCTCAAGCAGCCCTCGCCTTATCTCAGCCGCGCACGTCTCGAGCGCCGCGCTCGTATCACCCCGCATCAAGCCGCGAACCAGCCCGCGAACCAACCGCATCAACCTCCGCTCTACTGA
Protein Sequence: MEHIKVCRICLVMDVSMHNLQDYPLGTYFENVTGINLFKITDLPPFACYECTTLIKKFNSFRERCLRGQTALYGILQTSGKISTEDVKQIDRDYFHLTSNLVFSSTKTCEDFCLNYEDSKKNIKNEPFEQMDNILEYNIELDINSIKQESNFDDFGSLSMSSDDNEPLSIHKNGKEKKGKLVKKKTRKKRNNGECSEMSENSFGDFLNETEEKDSTIVQSLLDTKRKKRGRPKKNTKPENKLIKYTDHEEDLDIEEYVTVITLSLEEQIEEVKQRKTSSNYLNSAYKCDLCYKGFIHTDAWNHHLRKHDPSAGDMECCVCKFRFKTKRILLKHTSNHEKKYACKACSYVSRTPTQARQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRIKHPSQHICGVCGYSFVSSLGLAMHRTMMHKDLDLAKEKSVKVTGDEVEEKSRYCAECEVQFMSEEAWKRHLVTSVKHVPSYIFNNGCRVCGETFNNPEELRIHHRQKHARKRPTNYGKKPPKHDNKWPTNCEHCSEEIPNAREYWVHFRRVHPDKTYPIAKNHICDVCGKGFRGNAFLAYHKRTHSEERAFKCPQCPKAFHNRINLQMHARTHSDARPHPCTLCCKAFKCKAALDRHTRCHTGVKPYECGICGKAFAQSNSCKLHVRTVHLKQPSPYLSRARLERRARITPHQAANQPANQPHQPPLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01139242;
90% Identity: -
80% Identity: -