Basic Information

Insect: Papilio xuthus
Gene Symbol: -
Assembly: GCA_000836235.1
Location: NW:1356422-1363322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1 58 4.1 0.3 2 23 116 137 115 137 0.95

2 17 3.7 2.1e+02 2.4 1.8 2 23 141 163 140 163 0.93

3 17 5.7 3.2e+02 1.8 3.8 3 23 168 189 166 189 0.91

4 17 0.033 1.9 8.8 0.4 3 23 392 413 391 413 0.97

5 17 0.0088 0.5 10.6 0.4 1 20 421 440 421 441 0.96

6 17 0.0016 0.089 13.0 0.5 2 23 452 473 451 473 0.95

7 17 0.018 1 9.6 1.2 1 23 521 544 521 544 0.94

8 17 0.63 36 4.8 0.2 3 14 621 632 619 642 0.80

9 17 2.6e-05 0.0015 18.6 1.2 1 23 676 698 676 698 0.97

10 17 4.3e-05 0.0025 17.9 1.9 1 23 705 727 705 727 0.98

11 17 6.6e-05 0.0038 17.3 2.3 1 23 732 754 732 754 0.96

12 17 0.00016 0.009 16.1 1.6 1 23 760 782 760 782 0.98

13 17 1.5e-06 8.8e-05 22.5 1.2 1 23 788 810 788 810 0.97

14 17 0.0012 0.071 13.3 1.1 2 23 817 838 817 838 0.98

15 17 0.0003 0.017 15.3 0.9 2 23 846 868 845 868 0.97

16 17 0.007 0.4 10.9 2.0 1 23 873 895 873 895 0.96

17 17 2.7 1.5e+02 2.8 7.2 1 23 901 924 901 924 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1	58	4.1	0.3	2	23	116	137	115	137	0.95
2	17	3.7	2.1e+02	2.4	1.8	2	23	141	163	140	163	0.93
3	17	5.7	3.2e+02	1.8	3.8	3	23	168	189	166	189	0.91
4	17	0.033	1.9	8.8	0.4	3	23	392	413	391	413	0.97
5	17	0.0088	0.5	10.6	0.4	1	20	421	440	421	441	0.96
6	17	0.0016	0.089	13.0	0.5	2	23	452	473	451	473	0.95
7	17	0.018	1	9.6	1.2	1	23	521	544	521	544	0.94
8	17	0.63	36	4.8	0.2	3	14	621	632	619	642	0.80
9	17	2.6e-05	0.0015	18.6	1.2	1	23	676	698	676	698	0.97
10	17	4.3e-05	0.0025	17.9	1.9	1	23	705	727	705	727	0.98
11	17	6.6e-05	0.0038	17.3	2.3	1	23	732	754	732	754	0.96
12	17	0.00016	0.009	16.1	1.6	1	23	760	782	760	782	0.98
13	17	1.5e-06	8.8e-05	22.5	1.2	1	23	788	810	788	810	0.97
14	17	0.0012	0.071	13.3	1.1	2	23	817	838	817	838	0.98
15	17	0.0003	0.017	15.3	0.9	2	23	846	868	845	868	0.97
16	17	0.007	0.4	10.9	2.0	1	23	873	895	873	895	0.96
17	17	2.7	1.5e+02	2.8	7.2	1	23	901	924	901	924	0.96

Sequence Information

Coding Sequence: ATGGTATCCGATGATTCCGATGATGAGCCCTTGTCAGTTTTAGCTGCAGAGAAAAGATTACATCCCGAAAAATTCTCTGTAGCTGAGCCTCAAATTGAAGATGCCAGCATAGTTCccaaaaaaagaaagagaaaatCACTAACGCCAAAGAAACTGGGAATCGCCGTTAAAGTAAGAAAACAAAGGACTTTACCGCCACCTCCAGTGATAGAAAGACCTGCTGATGTTTGGCTCTATCTTAAAGATTTGAATCCTGCTGGTCCTTACAGCTGTTTACTATGTCCTGATTGGTTTATAAATCGATCCAAAATGATCATGCACTATgtgttaaatcataaaaaagattattgtGGTATTTGCAGatATTTTGTACCAGACAGAGAGTCATGGCATGcacatgtcaaatttcatattCCGTGGCCATGCTCTCAGTGTGTTGCAAATTTTCCCTGTCAAACAACTCTGCGCCATCATCTAAGCAGTATTCACAAACTCGTCCACTGTCGTCTATGTCACTTCCGTCTACCTGATAATGACCAATATAATACTCATCTTTTCCAAAAACACAATGTCATTAATGTACTTAGTAAAGACGAAGAAGTACTCTGGGTTTTTGATTATGATGGCACTacgaaatttttatgtttactctGTTCAAAAGGAAATAATCTCAGTTCTACATTTTTCAAGCATTATATGGGCTACCATCATTTTACCATCAAGTGCTTAACAACTTTAATCTCCGGTAGTGACCCACCGTTCACTGTCAACGGTGCCGATGTAAGTGCTCACTTTATTGATGGACAATTGCAAGGCCAGATACGTTACGGTTATGTTGATTTGGATAAAACGTCATTCAATGCTATCAAGCAGTTGGATGAACAAGGCAACgagaattacaattatttcaaagctgaagtaaaagaagaaattggTAATGATGATGTACAAAGACAGATAGAtaataaagaaactaaaaCTGAAGGTGATGttcatcaaaattataaaggtGATGAAGATTTTGATGTAACTCTTACAGAACTCATAGTTCTAGAAAAGTGTTACTTTGATTACGTTAACCGTACacttaatgatataaatagtAACCAAATGCCTTTGAACTCTTTAATACAATACGAAGATGCTAAATCTGATATTATAATGGATGTTGACTGTCCATTATGCAAATCGAGGTATGAAAATGCTCAAGCATTCACAATGCATATGAATAAAATGCATTGTATCAAACTAGTTCCATTATATTCATGTAGAGTATGTGCAACCACATTTGACACCCATAGTGAGCTAGAGACTCACACTGGTCTTGAACTGGGTAACTTTGAGGACCTTTGGATCTGTCAGTTTTGTGATAAAGAGTTTGATAACCGAGATGCTACAAGAAAGCATTTAAATGAGCATTGGGAAGTTATGGAATATGACAATTGCTTCAGTCCACACTTGGgttttaaatgtagattttgTCCGATACTGTTTTGGAACGAAACGGACCGTGAACAGCACCAAGTGAGAGTTCATTATGAGAAATATCAGGatcaattttacaaatgtgAAGGTTGTTCAGAATTGTTTAGTGATAAAgTGTGGTTCATTTATCATCATTTGGAGAAACATTTTGCCAACAAAATGACAACATACCTAATGAAATGCTGTTTATGCTGCATTGTCTTACCCAACATTGATGAGATGAGAAATCATTTCACCGAGGAACATCCAGAGGCTCGGAAAGTCTACTGTTCCTTAGACTCATGCCAATACAAACCTCTTAGTCATAGGAAATCATTTAAACTGCATGTGAAGACGATCCATAACCCGTCAGCTCGGGCAGAGAAGGCTGTGAACTGCACGGTGTGTGGGCGCGAGTTTGCAAGTGCACGGGCGTGCGGCGCTCACGTGGCGCAGGTGCATGGTCCTGGCAAATTCAAATGCAAACTGTGCAGAGACGTGCTACAGACTATGGACGAGAGGAAGCTTCACTACTTACTGCGTCATCCTGGACGACATCCATATGAGTGTGTGGACTGCGGCAAGTCTTTCCAGTACAAATCCTCATTGTATATGCACCGACAAGACCATATACCCAACAAGCAGACTTATACTTGCAATTACTGCTCTAAAGTTTTTATGAAGAAGGATTCGTTCCGCGAGCACGTGCAGATCCACGAAGGTCCACGTCACGCGTGCTCGTACTGCCCCATGAGGTTCGTGCAGCGCTCCAACATGCTGCGACACGAGCGCCGGCACACGGGCGAGCGTCCCTACGCCTGCCCGCACTGCCCGCGCACATTCGCTGACAAAGGCGCCTGTAATTCACACGTCAGaacACATTCCAAGGAAACATCATTCGCCTGTGTCTATTGCGGTCAgacatttgtacaaaaatccAAACTTACTTATCATATAAGAAAACATACAGGAGAAAATTTGGAAACTTGTCCGGTATGTTCCAAGCTGTTTACAAGCGGTTGTGCATTACGTGAACATATGAAGATACACGTTGCGAAGAAGGAACTAGTCAAATGTCCTCTATGTGACAAGAAGTACCAGGACGAGAGGTACATGTTGCGTCACCTGCGCACAACGCACGCGGGGGCGCAGCACGCCTGCCCGCTCTGCCACAAGCTGCTCACCAGCGCGGCCGGACTGCGACACCACGTCCTAACACATAGCGCCATCAACATGTTCCACTGCAAATGCTGTCAAAAATCTTACGCCATCAAGAGAACAATGATAAGACATCTGCGCAGGCGTCACGGATTAAAAGGTAcagagataaatataaaagatttcttCAGAAGACTCGACCCAAGAGAATGTCAATTAGGTTTAGATGAAGACACAATGATCAACATATTTGGGCCACCAAAGAAAATCATGTCCGATTCATTATTAGTTGATTACATGAATTTAgctaatctttataaaaagaatagaaaAGATGATGAAGCGGAGCAAgaaactgatgatgatgatgatgatgatgattcagATGAAGAATCTTTACAGACACTCAAGAAAGACGTGAAAACTGATGAAGGAGAAAGTACTAAAACAATTGagaatgttataattaaacaagaaaCGATCACAACAGATGTAGAATTGGAACCAACTGATTTTGTTAGCGTTAAAATTGAGCCGTACGATGAAAATGAAcatcaatag
Protein Sequence: MVSDDSDDEPLSVLAAEKRLHPEKFSVAEPQIEDASIVPKKRKRKSLTPKKLGIAVKVRKQRTLPPPPVIERPADVWLYLKDLNPAGPYSCLLCPDWFINRSKMIMHYVLNHKKDYCGICRYFVPDRESWHAHVKFHIPWPCSQCVANFPCQTTLRHHLSSIHKLVHCRLCHFRLPDNDQYNTHLFQKHNVINVLSKDEEVLWVFDYDGTTKFLCLLCSKGNNLSSTFFKHYMGYHHFTIKCLTTLISGSDPPFTVNGADVSAHFIDGQLQGQIRYGYVDLDKTSFNAIKQLDEQGNENYNYFKAEVKEEIGNDDVQRQIDNKETKTEGDVHQNYKGDEDFDVTLTELIVLEKCYFDYVNRTLNDINSNQMPLNSLIQYEDAKSDIIMDVDCPLCKSRYENAQAFTMHMNKMHCIKLVPLYSCRVCATTFDTHSELETHTGLELGNFEDLWICQFCDKEFDNRDATRKHLNEHWEVMEYDNCFSPHLGFKCRFCPILFWNETDREQHQVRVHYEKYQDQFYKCEGCSELFSDKVWFIYHHLEKHFANKMTTYLMKCCLCCIVLPNIDEMRNHFTEEHPEARKVYCSLDSCQYKPLSHRKSFKLHVKTIHNPSARAEKAVNCTVCGREFASARACGAHVAQVHGPGKFKCKLCRDVLQTMDERKLHYLLRHPGRHPYECVDCGKSFQYKSSLYMHRQDHIPNKQTYTCNYCSKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHVRTHSKETSFACVYCGQTFVQKSKLTYHIRKHTGENLETCPVCSKLFTSGCALREHMKIHVAKKELVKCPLCDKKYQDERYMLRHLRTTHAGAQHACPLCHKLLTSAAGLRHHVLTHSAINMFHCKCCQKSYAIKRTMIRHLRRRHGLKGTEINIKDFFRRLDPRECQLGLDEDTMINIFGPPKKIMSDSLLVDYMNLANLYKKNRKDDEAEQETDDDDDDDDSDEESLQTLKKDVKTDEGESTKTIENVIIKQETITTDVELEPTDFVSVKIEPYDENEHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01154495;
90% Identity: iTF_01144819;
80% Identity: -