Pxut000979.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- Znf574
- Assembly
- GCA_000836235.1
- Location
- NW:949084-956400[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.9e-05 0.0045 17.1 0.8 1 23 259 281 259 281 0.98 2 10 0.0057 0.32 11.2 2.0 1 23 288 310 288 310 0.98 3 10 0.00021 0.012 15.8 4.7 1 23 342 365 342 365 0.97 4 10 0.013 0.75 10.1 0.7 3 23 372 393 370 393 0.94 5 10 3.6e-06 0.0002 21.3 0.2 3 23 408 428 406 428 0.95 6 10 0.0019 0.11 12.7 0.8 1 21 434 454 434 459 0.93 7 10 2.3e-06 0.00013 21.9 0.9 1 23 467 490 467 490 0.97 8 10 0.00017 0.0098 16.0 4.1 1 23 496 519 496 519 0.98 9 10 3.2e-06 0.00018 21.5 0.8 1 23 528 550 528 550 0.98 10 10 3.3e-06 0.00019 21.4 0.5 1 23 556 579 556 579 0.96
Sequence Information
- Coding Sequence
- atggatttaattaaagaagaagaaatgtCTACATGCTGTGTGAACTGTTTGATCAATTTCAAAGATAGAAATATACAGTGCTACAAACTACAGAGTATACAttggaaaattatatttaaggtTGACGCACTATCTCTGTGTTTTATATGCAAGAAACTTGTACAAAATGCGGAATGTCTTATAGAAAGAATtctaaataatcaaatcttatttaatttagataatttttcagaACAAATTGTTATACAACCACATTTGAATGTAGCAGTATTAGATGCAATTGAATTATCAGATATTGATATGCAAACAGAAGAACAAActattgtatataaaaatggaatataTAAAGAATATGTGGTGAAGAATGAAATGGAATGGAAATATGAAGAACATTTGCAGAATGAAAATGACTTTATAGatatagatatagaaatcAAAAAAGAACCTTTAGACATTGCCGAATATGAAagtgatgaaataaaaatacaaaaaaaaactgtttataagaaaaaaggaatTAAGAAAGATAGAAAAGATAATGCTAAATTAGtTACTAATGTGAAAttggaagaaaaaaattgtcaaatagATGatgtaaaaactataaatgatattgttttatttgaagaattaaaaaaaatgaaaaaacttgaaaaagCTGAACTGAAAAAGTCAATCGaaaaaacaacaattcaaaagatttttataaataaagaacaattaATGCAAGAGAGAAATATGAAGGCTAATGAAAAGATATTCATTAATTGTCCATACAAAtgtatggattgtgtgaaaggtTTTGCATATAAAGGTACTTATCAGAAACATATGGAATTACATAGTAAGgataAAGGTAATTACGTATGTAATATATGTAAACAGAGAATGGATACAAACGACAAATTGTTTCggcataaaaaattacatcaaatccGTTACAAATGTTTGATATGCGGTGTCATACAAAAGGCATGTATGAAAGATCATTATAACTCGTGTCATTCCAAAGTGGCTGTACTTTACAAATGTCAATCCTGTCCTAGGACATACACAGATCGTTATTGTTTAAGGAAGCATGTAAACAGTACTCACAGAAACAGACGTGTGATTTGCGCACATTGTATGAAAACTTACGCTAGTAAAGATGTACTCAGAAATCATATACAATTACGACATCCAACAGTACTTCCTCCAACAGTATTAAAGAAGACAATTATTTGCAAGGAATGTGGTAAAGCATTCCAATCTCCGTCCCAATTGAAGGCTCACAGTTTAAAACATTCCTCAGAAAAGAGGTTCTATTGTGTTGAATGTGATAAAAGTTTTAAgtctgaaaatatattaaagcaaCACTTAAAATTGACAGCGCGACATATCACCCCTAGTGAATTACGTTTTCCTTGCACACAGTGCGACAGAAGATTCAGCATCAAACGAGACTTGGAACGACACATGAACAGGATACATCTCAATATAAAaccttataaatgcgatttgtGTGAAAagGCATTTAATAATAGTTGGTGCATGAAGAAACATAGAAAGATGACACACGAGGGATACAAGAGGCCGTACATATTCCCTTGCACTATGTGCGATAAGATATTTGACcGAAAATCTATTCTCAAATCGCACATTAGAACACACACTGGCGAGCGACCGTTCCAGTGTACAATATGTCCGGCGACGTTCACGCAGTCCAGTAGCCTCCTCACACATACAAAACTTGTACATCTCAAGCAAACAAGAGCTGGAAAACCAAAAggcatcaaataa
- Protein Sequence
- MDLIKEEEMSTCCVNCLINFKDRNIQCYKLQSIHWKIIFKVDALSLCFICKKLVQNAECLIERILNNQILFNLDNFSEQIVIQPHLNVAVLDAIELSDIDMQTEEQTIVYKNGIYKEYVVKNEMEWKYEEHLQNENDFIDIDIEIKKEPLDIAEYESDEIKIQKKTVYKKKGIKKDRKDNAKLVTNVKLEEKNCQIDDVKTINDIVLFEELKKMKKLEKAELKKSIEKTTIQKIFINKEQLMQERNMKANEKIFINCPYKCMDCVKGFAYKGTYQKHMELHSKDKGNYVCNICKQRMDTNDKLFRHKKLHQIRYKCLICGVIQKACMKDHYNSCHSKVAVLYKCQSCPRTYTDRYCLRKHVNSTHRNRRVICAHCMKTYASKDVLRNHIQLRHPTVLPPTVLKKTIICKECGKAFQSPSQLKAHSLKHSSEKRFYCVECDKSFKSENILKQHLKLTARHITPSELRFPCTQCDRRFSIKRDLERHMNRIHLNIKPYKCDLCEKAFNNSWCMKKHRKMTHEGYKRPYIFPCTMCDKIFDRKSILKSHIRTHTGERPFQCTICPATFTQSSSLLTHTKLVHLKQTRAGKPKGIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -