Pxut013058.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:3389010-3402820[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0013 0.076 13.2 0.5 1 23 132 155 132 155 0.95 2 9 0.45 25 5.3 0.0 1 20 232 251 232 253 0.93 3 9 0.066 3.8 7.9 0.1 3 21 324 342 322 343 0.93 4 9 0.0078 0.44 10.8 2.1 1 23 355 377 355 377 0.98 5 9 1.4e-07 8.2e-06 25.7 0.8 1 23 384 406 384 406 0.98 6 9 0.00051 0.029 14.5 0.2 1 23 412 434 412 434 0.98 7 9 0.00061 0.035 14.3 0.1 1 23 440 462 440 462 0.97 8 9 5.2e-05 0.0029 17.6 0.1 1 23 468 490 468 490 0.98 9 9 2.3e-06 0.00013 21.9 1.4 1 23 496 519 496 519 0.98
Sequence Information
- Coding Sequence
- ATGATGTTTGACCCACCCGACTTTCCGTACAGAGATCTTTCAGAATTAAGAGATAATTACGAAGCCGATGATCTTTTTAATAACGACGTACCAAATAACGCAGTAACAAACTTCGGCGATAGTGGAATTCACGAAGTAACAAACATTGACAATCAATTATCGCTCCATTCTAATAATTCCGGACGGTACTTTAACATTGAAAATGTGCCCCCTGCAAACAGCTCTGAAAATAATGAATCCACGAATACAGAGCTTTATGTAGTACAacaagacatttttaattttgaatcaaCTTTGCTGGatgataatattgttaatcaatttttattacctcTACAAACCGATGCCGATAAAAATAAGGATGTTGAGATTGGTCCTGATTTATTGGCTCTCCATTCATGTGCTGTATGCCATGAAATATTCACAACAGAAGCAGATTTACTTGATCATACAATATCTTTACACGCTTCAGATAATTACGTAGAAAGAAGTCAAAGTGTTCCTGAAGTTAATAGCTTAAAGGAATCAATtgaaacgaataatgaaaatcaaaGTTATGAAGCCGAGTGGTTGGTATGCCGTGTCTGCGAAAGAGTGTTGTCTACAGTTGTAGAAACAGAAAGCAATgACCAGTTGTGCTGCATCGACGATAATGGAAGGCACAGCATATCTCGCAGGAGATTGGGCGCTATGTACGTTTGCGACTCTTGCAGCTACTTGTTCGCGGATGGAGATGCTCTCGACCGACACCGGGTCACGTGCTGCTTGCAAGAAAGAGACAATATAATTTCTCCATTGCTAAATACCCATATATCTTCAGATATCTCAGATCTCTTAGATTCTTGTGAGAACGCGGATGCCAGTCTTTCCGCTGAAGAGACAGGGATGCAGACTGTCATATGCGATCGACCTTTGACGCGACAGACACGTCGGCCGTATTCAAATTCAAGCAGCAATAAGATGTGGAACTGTGGCTCATGTAATCAATTATTTGCTACTGCGagAGAGCTATACCGTCACAAACGGGGCGAGGACCGACCGGAGGGAGCACCGCTGGTCGCCTACGTTTGCGAGGAATGCGACAAGGTGCTGGGCAGCATGTGCGCTCTGCACACACACAAGAAGATGCATAGAGTCACCAAACcaGGCTATCCATGCCGCGTGTGCGGACGTCGCTTCAACCAGTCAGGACATCTCGCGATACATATGAGAATGCATACCGGAGAGCGGCCATATCCATGTGATCTCTGTCCGAAAGCTTTTAAAGTTAAGGTGGAGCGCGACGACCACCGGCGCACGCACACCGGGGAGCGGCCCTTTGCCTGCACGAGCTGCCCCAAGACGTTCACCGCGGCCGCACGCCTGCGCGAGCATGCACGCATACACACTGACCAAAGGCCATACCGGTGTGAGATCTGCGGTGCGGCGTTCCGGCGCCCGTACGCTCGTACTGTACACACTCTTATACACAGCGGGGAGAAGCCGCACAAATGCGACGTTTGCGGCACTGCCTTTAGgaGATCCGGCGATATGTGGAAGCACAAGAGAACTCTACATGGACTGCCCACAACTACCGCTCAGTGA
- Protein Sequence
- MMFDPPDFPYRDLSELRDNYEADDLFNNDVPNNAVTNFGDSGIHEVTNIDNQLSLHSNNSGRYFNIENVPPANSSENNESTNTELYVVQQDIFNFESTLLDDNIVNQFLLPLQTDADKNKDVEIGPDLLALHSCAVCHEIFTTEADLLDHTISLHASDNYVERSQSVPEVNSLKESIETNNENQSYEAEWLVCRVCERVLSTVVETESNDQLCCIDDNGRHSISRRRLGAMYVCDSCSYLFADGDALDRHRVTCCLQERDNIISPLLNTHISSDISDLLDSCENADASLSAEETGMQTVICDRPLTRQTRRPYSNSSSNKMWNCGSCNQLFATARELYRHKRGEDRPEGAPLVAYVCEECDKVLGSMCALHTHKKMHRVTKPGYPCRVCGRRFNQSGHLAIHMRMHTGERPYPCDLCPKAFKVKVERDDHRRTHTGERPFACTSCPKTFTAAARLREHARIHTDQRPYRCEICGAAFRRPYARTVHTLIHSGEKPHKCDVCGTAFRRSGDMWKHKRTLHGLPTTTAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149022;
- 90% Identity
- iTF_01145445; iTF_01149022; iTF_01139139; iTF_01147575; iTF_01144748; iTF_01140399;
- 80% Identity
- -