Pxut009880.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:215230-221880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.7e-05 0.0038 17.3 1.0 1 21 212 232 212 233 0.95 2 12 0.086 4.9 7.5 0.1 1 23 241 264 241 264 0.96 3 12 0.091 5.2 7.4 0.9 1 23 268 290 268 290 0.93 4 12 0.0029 0.17 12.1 1.5 1 23 295 318 295 318 0.96 5 12 0.00024 0.013 15.6 0.5 2 23 323 345 322 345 0.96 6 12 0.07 4 7.8 0.2 3 20 359 376 357 378 0.93 7 12 0.15 8.6 6.7 0.0 3 23 391 411 391 411 0.98 8 12 0.0013 0.074 13.2 0.1 2 23 417 439 416 439 0.95 9 12 0.0026 0.15 12.3 1.0 2 23 459 480 459 480 0.97 10 12 2.5e-06 0.00014 21.8 0.7 1 23 486 508 486 508 0.99 11 12 1.8e-06 0.0001 22.3 2.7 1 23 514 536 514 536 0.94 12 12 5.1e-07 2.9e-05 24.0 1.4 1 23 542 565 542 565 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATATATTAGTATGTCGCATTTGTTTGTCGAAAGACAAGaagttgtttaatttatttaaaaacaaattggcgGAACCATTTGAAATTCTTACTGGAATACAGATATCAGAATGTGATGGTCTGCCACATAAGATATGCAGCTTTTGCAGTACTCTTCTACAGAAATGTGTGTCCTTTAAAGAGAAATGTTTGAGCAGTCATGAATTTCTTAAATACTCTGTGCTGGAACATGGAATGATATCCGTGAATTATCTACACAcgtttaataaagatttaaatttctcACAGATAACTAAAACTGACACACTAACCATAGATAACAAGGAAGAACAGATAAAATTAGAGGATAATATTGACGAAGAAACTTTACTTGATACAAAAGttgaaagtaaaaagaaaataaagaaagagaagagaaaaaagataaatgaagttataaattttgaaaacgtAATAGTTAAGAAGGAAGAGGATGTTTTCGATTATGATGATTTGGATTTTACAGTGACAGATACAGTGGATATACATGAAGATATACAGGATGTTGAAATTGTAGTATTAAGTAAACAAGAACAAATAGAGGAAGTTGAATCGAGAAAAACATCTGtgaattatttgaattcaTTCTATAAATGTGATAAATGTTACAAAGGTTTTATAACTGAATCAACGTTTAGGAATCATATGGCAAAATATGATCCCaaaaacgGTGAATTTGTATGCGAGGTGTGCCGGGCGCGACGGCCTAGTGCGCGGCTGTTGCGCGCGCACGTGCTCTCCTCACACGCGCGTAAATACATTTGCAAGATATGCGGACATGTCTCGCGTGAAAGTTACAAAGCAAAGGAACATTCAAATTGGCACAAAGGTTTTTCATTTATCTGCAAAATATGTGGAGCTTCCTTTgttaaatctaCAAGTCACCTGACGCACATGAGGTTACAACATCCTTCAAACAGCTCGTGTGACATTTGTGGGGAGTCATTCATTGGGGAACATGGACTTAAGATGCATAAACGACGCGCGCATAGAGACGAACAGGATCAAGAAACAAAAGTTGTATCCCACTGTGAGAAATGTTCCGctgagttttttaatttagacgcGTTGAAGATTCATTTAGATGTTGCTAAGAATGGTTCATGTGATACTGAATTAAGATGGTGTCCATATTGTGCTCTGGGTTTGGATACAATTGAAAACTTCAATGACCATATAAAGGTACATCAAAAGGAAATCGTCCCATGTCAAGatTGTCCGCGCACGTTCGCGACAGCGCGCTCTCAGGCGACGCACTACCAGCGCGTTCACCTCGGCGTCAAACTGCGCCACAACAAGCCCACACTCAAACACGTCTCTGAGTGCGCTGTCTGTGAGCTCTGCGGCAAGAAGTGTGTCtCTAAAGCTATCTTGACATATCATCAAAGGATCCACACAGGAGAGAAACCTTACCAATGTTCTCAGTGCCCGAAGAAGTTTGGTTTGCAGCAGCAATTGACGATTCACATGCGTATCCACACAGGAGAGTGTCCGTACAAATGTCCTCATTGTCCTAAAGCATTCAAACATAAAGCCGCTCTCAACAGACACGACCGGGTGCACACAGGAGTGAAGCCTTACATTTGCCCTCACTGCGGGAAAACCTTCACGCAGTCAAACTCTATGAAACTGCACGTCAACACGGTACATTTGAAAATGCCCGACCCATACAGGAATAGACGGAAGAAGAATatctaa
- Protein Sequence
- MADILVCRICLSKDKKLFNLFKNKLAEPFEILTGIQISECDGLPHKICSFCSTLLQKCVSFKEKCLSSHEFLKYSVLEHGMISVNYLHTFNKDLNFSQITKTDTLTIDNKEEQIKLEDNIDEETLLDTKVESKKKIKKEKRKKINEVINFENVIVKKEEDVFDYDDLDFTVTDTVDIHEDIQDVEIVVLSKQEQIEEVESRKTSVNYLNSFYKCDKCYKGFITESTFRNHMAKYDPKNGEFVCEVCRARRPSARLLRAHVLSSHARKYICKICGHVSRESYKAKEHSNWHKGFSFICKICGASFVKSTSHLTHMRLQHPSNSSCDICGESFIGEHGLKMHKRRAHRDEQDQETKVVSHCEKCSAEFFNLDALKIHLDVAKNGSCDTELRWCPYCALGLDTIENFNDHIKVHQKEIVPCQDCPRTFATARSQATHYQRVHLGVKLRHNKPTLKHVSECAVCELCGKKCVSKAILTYHQRIHTGEKPYQCSQCPKKFGLQQQLTIHMRIHTGECPYKCPHCPKAFKHKAALNRHDRVHTGVKPYICPHCGKTFTQSNSMKLHVNTVHLKMPDPYRNRRKKNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141096;
- 90% Identity
- iTF_01144724;
- 80% Identity
- -