Pxut002461.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:593047-596206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.6e-07 2.6e-05 24.1 2.1 1 23 8 31 8 31 0.95 2 18 0.00044 0.025 14.7 0.3 2 23 37 59 36 59 0.95 3 18 4.2e-06 0.00024 21.1 0.3 2 23 68 90 68 90 0.97 4 18 2.4e-05 0.0014 18.7 4.0 2 23 99 121 98 121 0.94 5 18 8.9e-06 0.00051 20.0 0.6 3 23 130 151 129 151 0.95 6 18 5.2e-06 0.00029 20.8 1.5 2 23 160 182 159 182 0.96 7 18 1.6e-06 9e-05 22.4 1.8 1 23 188 211 188 211 0.98 8 18 2.9e-05 0.0016 18.5 1.0 1 23 259 282 259 282 0.97 9 18 0.052 3 8.2 1.1 1 23 307 330 307 330 0.93 10 18 0.021 1.2 9.4 1.3 2 21 338 357 337 358 0.94 11 18 0.26 15 6.0 1.3 2 23 367 389 367 389 0.83 12 18 1.1e-05 0.00065 19.7 4.4 1 23 422 445 422 445 0.96 13 18 0.0036 0.2 11.9 3.8 2 23 452 474 451 474 0.94 14 18 0.054 3.1 8.1 3.6 1 23 480 503 480 503 0.95 15 18 0.23 13 6.2 4.4 2 23 511 533 511 533 0.95 16 18 0.26 15 6.0 1.6 1 23 540 563 540 563 0.96 17 18 0.23 13 6.2 1.3 1 23 570 593 570 593 0.96 18 18 0.0017 0.098 12.9 2.3 2 23 607 629 607 629 0.96
Sequence Information
- Coding Sequence
- ATGGCTCAGTATCCATTGCACTATGTGTGCGATTACTGCAGCCGAACGTTCACTCGCAAATACAATCTGCAGACGCACATCGAGAACTATCACATGAATTCATCATGTTATTGTGAAATATGCGACCAGAGATTCGGAAGCCCAGCTGGTTTACAATTACATTTATCAAGAGGACACAATAGATATGGCCAAGCATTTCCGGAATGTGATATATGCGGACGTATTTTTACACGAAAGCAAAATATAACGTCACATATGATTACAGTTCATTTACAAAGCGGACGGCCAGATATTAGATGTCATTTATGCGAGAAAACGTTCACGacagaaagaaatttaaagcgACACAAAAATCAATTGCATAACCCTAATGCTGAATATCCAATTTGTGATATGTGTAAGAAAGTATTCAAAAGTAAATCTGCTTTAATAACACATATCACGTCTACACATCAACATGTAGATAAAGATTCACTGAAATGTCAACTGTGCAGTAaagtttatacaaataatagaaatttgaAAAGGCACATCGAAATGTTTCATGGAGAAAGAGgtgaatttaaatgtaacatttgcCCTAAAGTGTACACTTCTAATCAAAGTTTGAGACGTCATAACAAAACTATGCATAATCCGGAAACTATTCAATATAATTGTCAAATTTGctgtaaagaaatttatggTAAGGAAAATATAAACGAACATATAAACTTATGTACACAAAATGATAGTTCTGAATACAAAGAATTAGAAATAACATcacaattaatgtttaaatgtacaaattgTGATAAATCATTCAATTTAGAACCACTTTTAAGGAAGCATGTCAAATCTGAACATACttttcaagatttttataattattgtaaaaaatctttattacaaaCGATGACACAGACTCCGACTAAAGATTATATATgtgaattttgtaataatacgTTGAATAGTTTACACGATTTAAAGgaccatttattatttatacatgaaaaatattataatgtttcaaCGTGTAATGTGTGTTTTACGAAATTTTCAACGAATGAAACATTTTTGGAACATCGTAAATTTTGTATACCACCACCGGATGTCAATTCTTGTGACCATTGTGATAAATTGTTTACCGATATCACCAGTTTAGACTTCcatgtgaaaatatttcatccCGAAGCTCAATCTTCAAGTAGTAATGATGAAAATACAGAGGGAAATTACAAATTGAAATgtcatattaagttaaaacatACTAAAGAGCAAAGTTTTGATTGTCATTATTGTGGAAAAACGtgcagtaataaattttatctaatatcgcatattaaaattgtacatagTAATATATCTTGTTCTAAATGTGATTATTGCCATAAATGGtttaaatctaaaagaaatataagaaGACATATTGAATACACACATCTTGGTATGCAGCGTCACAAATGTATAGAATGTCAAACATTATTCAAAGAGAAAAGAAGTCTCCGGAAACATGTTAGAATAAAACATCCACATTCAACATTATTCCCCCAATGCCATATATGTTATAGAAGATTTGAATCAGCCAAATCTTGTAAAgtacatttgaaattaatacattctttaaatttgtCAACACATCCGTGCGGCTTGTGTTCAATATCATTCAATTGTATAGAAGCTTTAAaggaacatttaaaaactaatcatcTAGCTGAAGATGAAATATACAAATGCGATGCATGCAACCTACTTTTTAAAGGTCAAAGTAAATTTGATCAACACAAAGAGATGTATCATTCAAACATAATATGGACTGGGAAACGTAAATCTGTGCCCCGATGTGTTATATGCATTAAAGATTTTAGTTCgagaaaaactttaaaacgaCATATTAAGAAGTTTCACAACGAATTCGATGTAGACGATTTAGCCAATTATTCATGGCTTGTTAAAATAACTAGCGTTGATTGTGatgaatgtataaaaaattttacagatgaattaaaaaatattaattacgatAAATATAACGAATCTTTAGAAACGGTTGTGTATAAATGTGATACATGTTTAACATCATATAATATGTtagaatattcaattttaaaacataaattgaacATTTCAACTAAAGGTAAGATGATTATGAGTGAATTTTGTACAGCGGAGTTAAGTGAAGGTGATGATGAATTAAACTTATCACAGGATCCGGAGAGCACAACTGATTAA
- Protein Sequence
- MAQYPLHYVCDYCSRTFTRKYNLQTHIENYHMNSSCYCEICDQRFGSPAGLQLHLSRGHNRYGQAFPECDICGRIFTRKQNITSHMITVHLQSGRPDIRCHLCEKTFTTERNLKRHKNQLHNPNAEYPICDMCKKVFKSKSALITHITSTHQHVDKDSLKCQLCSKVYTNNRNLKRHIEMFHGERGEFKCNICPKVYTSNQSLRRHNKTMHNPETIQYNCQICCKEIYGKENINEHINLCTQNDSSEYKELEITSQLMFKCTNCDKSFNLEPLLRKHVKSEHTFQDFYNYCKKSLLQTMTQTPTKDYICEFCNNTLNSLHDLKDHLLFIHEKYYNVSTCNVCFTKFSTNETFLEHRKFCIPPPDVNSCDHCDKLFTDITSLDFHVKIFHPEAQSSSSNDENTEGNYKLKCHIKLKHTKEQSFDCHYCGKTCSNKFYLISHIKIVHSNISCSKCDYCHKWFKSKRNIRRHIEYTHLGMQRHKCIECQTLFKEKRSLRKHVRIKHPHSTLFPQCHICYRRFESAKSCKVHLKLIHSLNLSTHPCGLCSISFNCIEALKEHLKTNHLAEDEIYKCDACNLLFKGQSKFDQHKEMYHSNIIWTGKRKSVPRCVICIKDFSSRKTLKRHIKKFHNEFDVDDLANYSWLVKITSVDCDECIKNFTDELKNINYDKYNESLETVVYKCDTCLTSYNMLEYSILKHKLNISTKGKMIMSEFCTAELSEGDDELNLSQDPESTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144707;
- 90% Identity
- -
- 80% Identity
- -