Basic Information

Insect: Papilio protenor
Gene Symbol: -
Assembly: GCA_029286645.1
Location: JAGSMZ010000014.1:443136-444884[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00062 0.054 14.5 0.4 2 23 221 243 220 243 0.92

2 9 4 3.5e+02 2.5 6.9 1 23 277 300 277 300 0.95

3 9 0.00077 0.067 14.2 0.0 1 20 306 325 306 327 0.94

4 9 5.5e-05 0.0048 17.8 2.9 2 23 349 370 348 370 0.96

5 9 4.7e-06 0.00041 21.1 1.1 1 23 377 399 377 399 0.96

6 9 0.00013 0.011 16.6 5.0 1 23 405 427 405 427 0.98

7 9 1.6e-05 0.0014 19.5 1.5 1 23 433 455 433 455 0.98

8 9 0.097 8.5 7.6 3.0 1 21 461 481 461 483 0.76

9 9 1.8e-06 0.00015 22.5 1.4 1 23 489 512 489 512 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00062	0.054	14.5	0.4	2	23	221	243	220	243	0.92
2	9	4	3.5e+02	2.5	6.9	1	23	277	300	277	300	0.95
3	9	0.00077	0.067	14.2	0.0	1	20	306	325	306	327	0.94
4	9	5.5e-05	0.0048	17.8	2.9	2	23	349	370	348	370	0.96
5	9	4.7e-06	0.00041	21.1	1.1	1	23	377	399	377	399	0.96
6	9	0.00013	0.011	16.6	5.0	1	23	405	427	405	427	0.98
7	9	1.6e-05	0.0014	19.5	1.5	1	23	433	455	433	455	0.98
8	9	0.097	8.5	7.6	3.0	1	21	461	481	461	483	0.76
9	9	1.8e-06	0.00015	22.5	1.4	1	23	489	512	489	512	0.98

Sequence Information

Coding Sequence: atggACGAGAAAAGTGAAACTTACTACCATTGTATGTTATGCGCCCAGCTAGAATGTACCAGTAAATTAATCCCATTGCAAGCAGACGAAGAGGTGTTTCACAAAGCTATTGTAAAATTGTcacgtttaaatattttgtacgaTTACGACGAAACACTTCCGAAGAACGTTTGCGAATCATGTAACGATAATCTTGAGAAAGCCTTTGCATTCGTAGCAAAAGTTGAGAAAGCCCATAATATTCTATCTgatctttataaaaacaaaagtaactacTTAAAAGAGCAAGAATCTGATATTTCGGATGATGAATGcgattttgtaaataacaaaaattacagtatttttaaaaatcaacagAGCTGTGTTTTGGAAAACATAAAGGTTGAATTTTCTGATGATCCCCAGAATCATGATTTGGAACAGAATGATAATATGCAACATAAACCGAATGACATTTCGGAACATCTGGATTCTTCAAGATATAAATCGGAATGCAATGCTGCCTTAGACTTCGAAATTTACTCACAATCTTCTAACAACTGCTCTGATATCTCAGAAGTAAACTCAAGTGACCATGTTCACAACAACGAAATTAAGAGTAGCGGGAGCACAGACTTGACATTAACTGGAACATTAACTTGGAATGATTACCTCTGGACTTGTTCCATCTGTGAAACTCAATTTTCTAACAATGAAGAACTAAAACTACATTCAATGCAATACCACCAAATATGCAatgcattaaaatgttatgaatgtaaaaagaagaaattgcatttaaatgcATTCATTGTACATGTTCAAAGGCATAACACTCATCTCAAATTTATGTGCTACAAATGTAATTGCAAATTTACATGTACCCGTGCACTAAATAGTCACACAAGATTAGCACACGGgcctaaaacaaaatatgtatgtCCCGGATGCAATGTTGATTTTGAAAGTTCAGAAGAATTACAAACGCATAAGGATACATTCTATAGAGGAAAAAGGTCCATACATGTACCTGCTGAGTTGGTCTCTAATCAGAATAGCTTGTCatgtgaaatttgtaaaaagtcttttaaaaaaaagcaattactTCACAATCATTTACTCATACATACTGATAGAAAGAAGGAGCATATCTGTGATAAATGTGGTAAAggatttgttaataataatcaattaaaatcgcatttaatatcACATAAAGACAAACGATGCCATGAGTGCAAAATATGCAAGAGTAGTTTTAAATCATTGcggcatttaaaaaatcatatagcCACTCACAGTGGTGAGAAGCCTCATAAATGTGATCTATGTGGAAAAGGGTTCCGTTTAAAGAAATATCTCAACTCCCATATAATTATACACACCAACTCTCTGCCATATGATTGTTCATATTGCGATAAAAAGTTTAGGTTTAAAACTATTCGGGACCAACATACTAGGCAGCACACTGGATTCAAACCATATTCATGTGAAATTTGTTCTAGAGATTTTACAAATTGgcctaattataataaacatatgaaaaggCGCCATGATTTGAATATGGCAAAGAGAAAAACGACACCAGAAGGTGTGTATCCAATTAACCCATCTActggtaaaataataaaatatgatgcTAATGAGACTCTGGAATCAAAGAATCAGAATATTAATGGAAGAGTCAAGAGGATGTCATCAACCcataaaaaactacaaattaatGATTTTGATGGTGCCCAAAATGAAAAATCTGAAACAAAATGA
Protein Sequence: MDEKSETYYHCMLCAQLECTSKLIPLQADEEVFHKAIVKLSRLNILYDYDETLPKNVCESCNDNLEKAFAFVAKVEKAHNILSDLYKNKSNYLKEQESDISDDECDFVNNKNYSIFKNQQSCVLENIKVEFSDDPQNHDLEQNDNMQHKPNDISEHLDSSRYKSECNAALDFEIYSQSSNNCSDISEVNSSDHVHNNEIKSSGSTDLTLTGTLTWNDYLWTCSICETQFSNNEELKLHSMQYHQICNALKCYECKKKKLHLNAFIVHVQRHNTHLKFMCYKCNCKFTCTRALNSHTRLAHGPKTKYVCPGCNVDFESSEELQTHKDTFYRGKRSIHVPAELVSNQNSLSCEICKKSFKKKQLLHNHLLIHTDRKKEHICDKCGKGFVNNNQLKSHLISHKDKRCHECKICKSSFKSLRHLKNHIATHSGEKPHKCDLCGKGFRLKKYLNSHIIIHTNSLPYDCSYCDKKFRFKTIRDQHTRQHTGFKPYSCEICSRDFTNWPNYNKHMKRRHDLNMAKRKTTPEGVYPINPSTGKIIKYDANETLESKNQNINGRVKRMSSTHKKLQINDFDGAQNEKSETK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01147617;
90% Identity: iTF_01147617;
80% Identity: -