Ppro016902.1
Basic Information
- Insect
- Papilio protenor
- Gene Symbol
- zfh1
- Assembly
- GCA_029286645.1
- Location
- JAGSMZ010000040.1:1060701-1067457[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00067 0.059 14.4 2.0 1 23 270 292 270 292 0.98 2 11 0.014 1.2 10.3 1.2 1 23 299 321 299 321 0.98 3 11 2.2 1.9e+02 3.3 1.4 1 20 325 346 325 348 0.80 4 11 3.1e-06 0.00027 21.7 2.1 1 19 353 371 353 374 0.96 5 11 0.0087 0.76 10.9 1.1 2 23 382 404 381 404 0.95 6 11 0.00015 0.014 16.4 0.2 3 23 419 439 417 439 0.95 7 11 0.0068 0.6 11.2 4.8 1 21 445 465 445 470 0.94 8 11 3.8e-05 0.0033 18.3 0.5 3 23 480 501 478 501 0.96 9 11 3.8e-05 0.0033 18.3 0.3 1 23 507 530 507 530 0.95 10 11 5.3e-06 0.00046 21.0 0.7 1 23 539 561 539 561 0.98 11 11 6.3e-05 0.0055 17.6 0.7 1 23 567 590 567 590 0.97
Sequence Information
- Coding Sequence
- ATGGATTTAATTAAAGAGGAAATGAAAACATCTTTCTGTGTGAATTGTTTGAGCAAGAACGATGatagaaatgaaaattacaaaCTACAGAGTgagcatttgaaaataatattaaagGTTGATGGTCTCCCTCTATGTTTTATGTGCAAGAAATTAGTACAAAATGCTGAATGTGTTATAGAGAAAATTctaaataatcaattattagttaatttacataatTTTTCAGAACAAACTATTAATGTTATCATACAACCATGCTTTGATATAGTGGTTTTAGATACTATTGAATTATCTGGCGATGAACAAATGGAACCTACAATTTCTGTATATAAATATggtgtttataaaaaatgtattaaggaTGAAATGAAATGTGAATATGAAGGTTACTTGCAGGACAATGATTTTAgagATGTGcaagtaaatgtaaaaaatgaacTTCCAGATATTAACGCTGAATGTGAAAGTGATATTCAGGTTAAAATACCAAAGGAGaatgttaaaaagaaaaaagtaactaAGAAAGGTAGAAAAAGAAAAGCCAAAGTAGtTACTAATGGAAACTTCGAGGAGATAAATTGTCAAATTGACAATGAGAATACTATAAATGCTATGGATTTATTAGAAGAATTGGAAACAAAggaacatttaataaaagtgaaaaataaatctattgaaagaaaaacaatccaaaagttttatattaatatagaagaATTAATGCAAGAGAGATATATTAAGGCTAATGAAGAAATGTATATGAATTGTGCATATaaatgtatggattgtgtaaaaggttgtgcatataaatgtatggattgtgtaaaaggtttTGCATATAAAGCTACTTATCATAAACATATGGAATTACATAGTAaggatAACGGTgattatgtatgtaatatatGTCAGCAACGAATGGATACAGAAGATAAATTGTTCCgacataaaaaattacatcaaaCTCGTTATAAATGTTTGATATGCGGtgttatacaaaaaacaagtATGAGAGACCACTATAATTCACATCATTCTAAAGTTGCTATACGTTACACATGCAAAACCTGTCCTAAAACATTTACcGATCGGTATAATTTAAGGAAGCATTCCTCCTATTGTCTTAAAGACAGACGTGTGACTTGCGCGCATTGCATGAAAACCTACGCTAATAAAGATGTGCTCAGAAATCATATACAATTAAGACATCCAAATATACTTCCTCCAAAAGTATTGAAGAAGACAATAATATGCAAGGAATGTGGAAAAGGTTTTCTAACTCCGTCCCAATTAAAGGCCCATAATTTGAAACATTCTTCGGAGAAAAGATTCTATTGTGTTGAGTGTGATAAaagttttaaatgtaaatatacattaaagcaacatttaaaactaacatcgCGGCATGTCAACCCTAGCGAGTTACAACTTGCCTGTACGCAGTGCGACAAAAGATTCGGCATCAAACGTGATTTGGAACGTCACATGAACAGAATACATCTCAATATAAGAccttttaaatgcgatttatGTGATAAGGCATTCAATAACAGTTGGAGCGTAAAGAAACATAAAGCGATTGCACATGAAGGATACAAGAGGCCCTACATTTTCCCTTGCACTATgtgtgataaaatatttgacCAAAAATCGATTCTCAAATCGCACATTCGTACGCACACTGGCGAGCGACCATACCAGTGCACCAGATGTCCAGCGAAATTCACACAATCCAGTAGCCTCGGCACCCACACAAGACTAGTACATCTCAGGCAAACTAGAGATGGCAAACCAAAGAgccttaaataa
- Protein Sequence
- MDLIKEEMKTSFCVNCLSKNDDRNENYKLQSEHLKIILKVDGLPLCFMCKKLVQNAECVIEKILNNQLLVNLHNFSEQTINVIIQPCFDIVVLDTIELSGDEQMEPTISVYKYGVYKKCIKDEMKCEYEGYLQDNDFRDVQVNVKNELPDINAECESDIQVKIPKENVKKKKVTKKGRKRKAKVVTNGNFEEINCQIDNENTINAMDLLEELETKEHLIKVKNKSIERKTIQKFYINIEELMQERYIKANEEMYMNCAYKCMDCVKGCAYKCMDCVKGFAYKATYHKHMELHSKDNGDYVCNICQQRMDTEDKLFRHKKLHQTRYKCLICGVIQKTSMRDHYNSHHSKVAIRYTCKTCPKTFTDRYNLRKHSSYCLKDRRVTCAHCMKTYANKDVLRNHIQLRHPNILPPKVLKKTIICKECGKGFLTPSQLKAHNLKHSSEKRFYCVECDKSFKCKYTLKQHLKLTSRHVNPSELQLACTQCDKRFGIKRDLERHMNRIHLNIRPFKCDLCDKAFNNSWSVKKHKAIAHEGYKRPYIFPCTMCDKIFDQKSILKSHIRTHTGERPYQCTRCPAKFTQSSSLGTHTRLVHLRQTRDGKPKSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01147549;
- 90% Identity
- -
- 80% Identity
- -