Basic Information

Insect: Papilio protenor
Gene Symbol: -
Assembly: GCA_029286645.1
Location: JAGSMZ010000059.1:291383-296966[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0008 0.069 14.1 4.5 1 23 101 123 101 123 0.99

2 11 3.7e-07 3.3e-05 24.6 2.0 1 23 129 151 129 151 0.98

3 11 5.5e-06 0.00048 20.9 2.7 1 23 157 180 157 180 0.97

4 11 0.019 1.6 9.8 4.2 1 21 186 206 186 208 0.95

5 11 6.6e-05 0.0058 17.5 2.8 1 23 214 236 214 236 0.99

6 11 1.4e-05 0.0012 19.7 2.8 1 23 242 264 242 264 0.98

7 11 0.02 1.7 9.7 0.7 1 23 272 295 272 295 0.96

8 11 8.1e-05 0.0071 17.3 3.1 1 23 302 324 302 324 0.99

9 11 0.17 15 6.8 2.5 1 23 330 352 330 352 0.98

10 11 4.8e-05 0.0042 18.0 5.0 1 23 358 381 358 381 0.94

11 11 2.4e-05 0.0021 18.9 1.1 1 23 395 417 395 417 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0008	0.069	14.1	4.5	1	23	101	123	101	123	0.99
2	11	3.7e-07	3.3e-05	24.6	2.0	1	23	129	151	129	151	0.98
3	11	5.5e-06	0.00048	20.9	2.7	1	23	157	180	157	180	0.97
4	11	0.019	1.6	9.8	4.2	1	21	186	206	186	208	0.95
5	11	6.6e-05	0.0058	17.5	2.8	1	23	214	236	214	236	0.99
6	11	1.4e-05	0.0012	19.7	2.8	1	23	242	264	242	264	0.98
7	11	0.02	1.7	9.7	0.7	1	23	272	295	272	295	0.96
8	11	8.1e-05	0.0071	17.3	3.1	1	23	302	324	302	324	0.99
9	11	0.17	15	6.8	2.5	1	23	330	352	330	352	0.98
10	11	4.8e-05	0.0042	18.0	5.0	1	23	358	381	358	381	0.94
11	11	2.4e-05	0.0021	18.9	1.1	1	23	395	417	395	417	0.96

Sequence Information

Coding Sequence: ATGACAAGCAAAGAAACTCTAGAGgccATGGaagaaatatatgtaaaacaaaTTGAGATAACAGATAATTATACTAATGAGTATAAAGGAGTAACAATGATGCCAATACAGAACATATCAGGAGATATAAACTATGTTATTGTTGTACAAGAAGGAACAACACAAGTTAACAGTGATATCCAGgatgaatttattaaagtttatgattttgatgaaaatgaaaatcttAACATTGATAATAACGATACTAAAGTTTACGGGACCACTAAGAAAACTCAATCTAAGCGTTTCCGAGGACACTTCCAGTGTAGTATCTGTTCCTACACTACTCATCGTCGATATTTGCTTTTGAGACATTTGAAATCTCATTCTGAGAACCGCGACCATAAATGCAACGTGTGCGGGCGCGGCTTCAAGACTGCCAGCTCGCTGCAGAACCATACCAACATGCACTACGGCCTCAAGCCGCATCGGTGTACATACTGCGACTCTTCATTCACTACTTCAGGTGAGCTAGTACGTCACATCAGATACAAGCACACACACGAGAAGCCTCACAAATGCCAGGAGTGCGACTACGCGTCTGTGGAACTGTCCAAACTGCGCCGGCACCAGCGCTGCCACACAGGCGAGCGCCCGTACCAGTGTCCTCACTGCACGTACGCGTCGGCGGACACTTTCAAGCTGAAGCGTCACCTGCGCACACACACCGGTGAAAAGCCTTACAAGTgtgaatattgcaatatgcaATTCACACAAAGTAACTCATTGAAGACACACAAACAAATACATAACATAAGCGACAGGCCTGAGTTCGCGTGTGAAATCTGCCCGAGCAAGTGCGGCCGCATGACGGACCTGCGCTTACACATACAGAAGCTGCACACCGCAGCTAAACAAccatttaaatgcaaaatatgTAGCGAAATGTTTGCAGATCGTTATACCTGGAAAATTCATCATAAGACGCATAAAGGCGAGAAGTGCTTCAAGTGTGAAATGTGCTCGTTTGCGGCGTGCACGCTGGCGCGGCTGAAGACGCACACGCTGAAGCACACGGCCGCTAAGCCGTTTGTCTGCCCGCACTGCGAGCAATGCTTCAGACAGAAGCAGCTGCTTCGACGACATGAGAATTTGTACCATAAACCGGGATATGTACCTCCTCCATCAAAGGAGAAGACTCATTCTTGTCAGCGATGTGGCCGCGCCTTCGCCTACCTCGGCAACCTGACTCGCCATCTCAGTCTGCACGAGCCAAAGCCTGCAGCTTCCGAACAAATCGTGATTTCTGAACCAATTAAAAACGTTCAATGTGACAGTGAAGAGCCAAAGGTAAAGGCTGAGCTGTCTGACGAGCCAGCAAATACAGATaatctaaataataacaaaaaaataactttatacgATGCAGAAACAAAATCGTATTTTGTGATAGAAGTCATCAATTGTACTGATTCAGAAACGATCACTGAAGTCCCGACACCATTTATTGAAGAGAATATAGAAGTTGAGGAAGAGACGATGCTCTCAGAAGATGTAAAAGATGATCTGAACTTAGATAATGTAGAATTATGTTTCAGATttgatgaataa
Protein Sequence: MTSKETLEAMEEIYVKQIEITDNYTNEYKGVTMMPIQNISGDINYVIVVQEGTTQVNSDIQDEFIKVYDFDENENLNIDNNDTKVYGTTKKTQSKRFRGHFQCSICSYTTHRRYLLLRHLKSHSENRDHKCNVCGRGFKTASSLQNHTNMHYGLKPHRCTYCDSSFTTSGELVRHIRYKHTHEKPHKCQECDYASVELSKLRRHQRCHTGERPYQCPHCTYASADTFKLKRHLRTHTGEKPYKCEYCNMQFTQSNSLKTHKQIHNISDRPEFACEICPSKCGRMTDLRLHIQKLHTAAKQPFKCKICSEMFADRYTWKIHHKTHKGEKCFKCEMCSFAACTLARLKTHTLKHTAAKPFVCPHCEQCFRQKQLLRRHENLYHKPGYVPPPSKEKTHSCQRCGRAFAYLGNLTRHLSLHEPKPAASEQIVISEPIKNVQCDSEEPKVKAELSDEPANTDNLNNNKKITLYDAETKSYFVIEVINCTDSETITEVPTPFIEENIEVEEETMLSEDVKDDLNLDNVELCFRFDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01147565;
90% Identity: iTF_01147565;
80% Identity: -