Ppro018422.1
Basic Information
- Insect
- Papilio protenor
- Gene Symbol
- -
- Assembly
- GCA_029286645.1
- Location
- JAGSMZ010000046.1:2332026-2334724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0027 0.24 12.4 0.3 2 23 56 77 55 77 0.97 2 16 0.0029 0.25 12.4 0.3 1 23 81 103 81 103 0.96 3 16 0.64 56 5.0 0.6 1 19 108 126 108 131 0.75 4 16 0.0051 0.44 11.6 3.2 3 23 139 160 137 160 0.95 5 16 0.0022 0.19 12.8 0.2 1 23 167 190 167 190 0.95 6 16 8.1e-07 7.1e-05 23.5 0.6 1 23 197 219 197 219 0.97 7 16 1.9e-06 0.00016 22.4 0.9 1 23 225 247 225 247 0.98 8 16 0.0041 0.36 11.9 0.3 2 21 251 270 250 271 0.93 9 16 0.0028 0.24 12.4 0.2 1 23 343 366 343 366 0.96 10 16 0.39 34 5.7 2.2 2 23 393 415 392 415 0.93 11 16 0.008 0.69 11.0 2.0 1 23 437 459 437 459 0.98 12 16 3.7e-05 0.0032 18.3 0.5 1 23 463 485 463 485 0.98 13 16 1.5 1.3e+02 3.8 0.3 1 23 490 513 490 513 0.77 14 16 0.0055 0.48 11.5 0.1 1 21 519 539 519 542 0.89 15 16 0.003 0.26 12.3 2.2 1 23 549 572 549 572 0.95 16 16 3e-06 0.00027 21.7 1.6 1 23 579 601 579 601 0.98
Sequence Information
- Coding Sequence
- ATGTCCCTTATCAATGTAGATGTGACTGATGCCACATGTCGCGTGTGCAGATGTCCTTACTCCACCGTCCTCCATATGCGTCAGCACGCTATCCAACACGGTTACAAGTTGGATAATGCCCAGCCAGATGGCGTGTTACCGTTCAGATTGGATAAGGAGGACTGGCGGTGCGTCATATGTAGTGAGTCCTTCAACAACTTCCTCAAACTGTATGAACACATGAACGTTCATTACCAGCACTACATCTGCTCCACCTGCGGCAAGGGGTATATGACGGCGATGCGCCTCAGGAAACACTCCGAAGTCCACGTTACCGGATCCTTTCCCTGCGACAAATGCTCTCGAGTCTTTATGATGCGGGCAGCCAGAGACCACCACAAAGCACAGGTCCACTCTAAAGGACCACGCTACGGCTGTCCCCATTGTAATATCCGTTTCAAAACCTATTATCACAGGATGAACCACTTAAACGAGGTCCACAAGGAAAAGTTGGTTTCGTACAAATGTAGCGTTTGTGAGTTATCGTTCAGCACAAGTGGCAAACGTGGAGCGCATGTCCGATTGGTACACCTGCCTCAACAGCGGACTTTTCCATGTCCCAACTGCGACTGGCTCTTCAAAACTAGATCCGACTTGAAGAAACACATGGTGAAGCATACCGGTGAAAGGAATTACTCTTGCATGGTCTGTGGCAAAAGCTATCCGAGGAGTAAGACGTTGCAAATGCACCTTAGAAGCCACGAGGACCTGACGTGCAAGCTGTGCGGGTCTCTATTCAAGCAGCGTTCGCAACTGTTGGAGCACGCGCGTTCCGCTATTGCGGACGAGACGGCAAACGAGGTAGTTAAGCCTATTAGGAAGTTAAAAGAGAACGTAAGCGCACGACAGATGCGCAGGCGTCGGCGCGCCAACAATCAACTGCCCGAAGAGTCCGACAGGCGGATCGTGAAAACTATGATGCGAAGGAACGCGATCACGATTTTAGAATGTTCCACCGCTTGGGCCTTTAGATGGTTCCATAGTTCCTTCTATTGTTCTTATTGCGATGAGAAATTTGTCGATACTCTGCCTCTGCGTGAACATGTAATCACTTCCCATTTAAATGAACCCCCAACAGTGAGGGTATTTGCAAAACTGACTGAAAATAACATGCTCAAAATAGACATAACGAGTTTAAACTGTAGGCTTTGTAACTGTGTTTGTTCCACCGTAGATGTACTCAAGAATCATCTTACAATTGCACATAAAAAGATGTTTAATAAGAGTTATAGCGATGGTGTTCTTCCTTTCAAACTAGATCAGGCAGGGTTTAACTGTCAAATATGTTTTGAGTTCTTCTCAAGTTTCACTAAAATAAACGAGCACATGAATTCTCATTACCAAAATTATGTTTGCGACGCTTGCGGTAAGGCTTTCGTCTCCAAATCCAGGTTCAGAACCCACGTGCAGTCGCATGAAATTGGCAATTTTCCTTGCGGGGATTGTGACGAAGTTCTTCCAACTAGAGCGGCTAGAATGTGTCATAGAATGAAAGTCCATAAGAGTGGCGTTCGGTACGCTTGTCCGCGCTGTCCCGAGGTCTTTACTACCTACTATGCTAGAGCAAAACATTTGGTCGACAGCCACGCACAGCAAAGGAGAATATATGAATGCACGACATGCGGTAAAGCTTTTGAAACGAGTTGCAAACGCGCGGCCCATTTCCGTCTCTCCCACAAACCTGTAGAGAAGCGTTTCGAATGCTTGTACTGCCCTTGGCACTTTGTTAGTCAATCGAAACTCCGGCGCCACTTACGAGCCCATGATGTCGTCGGACAAGCACAATATTGCACGAAGAATTGTTGA
- Protein Sequence
- MSLINVDVTDATCRVCRCPYSTVLHMRQHAIQHGYKLDNAQPDGVLPFRLDKEDWRCVICSESFNNFLKLYEHMNVHYQHYICSTCGKGYMTAMRLRKHSEVHVTGSFPCDKCSRVFMMRAARDHHKAQVHSKGPRYGCPHCNIRFKTYYHRMNHLNEVHKEKLVSYKCSVCELSFSTSGKRGAHVRLVHLPQQRTFPCPNCDWLFKTRSDLKKHMVKHTGERNYSCMVCGKSYPRSKTLQMHLRSHEDLTCKLCGSLFKQRSQLLEHARSAIADETANEVVKPIRKLKENVSARQMRRRRRANNQLPEESDRRIVKTMMRRNAITILECSTAWAFRWFHSSFYCSYCDEKFVDTLPLREHVITSHLNEPPTVRVFAKLTENNMLKIDITSLNCRLCNCVCSTVDVLKNHLTIAHKKMFNKSYSDGVLPFKLDQAGFNCQICFEFFSSFTKINEHMNSHYQNYVCDACGKAFVSKSRFRTHVQSHEIGNFPCGDCDEVLPTRAARMCHRMKVHKSGVRYACPRCPEVFTTYYARAKHLVDSHAQQRRIYECTTCGKAFETSCKRAAHFRLSHKPVEKRFECLYCPWHFVSQSKLRRHLRAHDVVGQAQYCTKNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -