Ppro018247.1
Basic Information
- Insect
- Papilio protenor
- Gene Symbol
- ZEB2_1
- Assembly
- GCA_029286645.1
- Location
- JAGSMZ010000046.1:260215-266210[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.7e-05 0.0076 17.2 0.4 1 21 166 186 166 187 0.96 2 21 4.8 4.2e+02 2.2 0.7 3 23 195 214 194 215 0.83 3 21 0.74 65 4.8 0.2 1 23 220 243 220 243 0.95 4 21 1.1e-05 0.00092 20.0 2.2 2 23 249 270 248 270 0.95 5 21 0.013 1.1 10.4 2.2 2 21 274 293 273 294 0.92 6 21 0.0081 0.7 11.0 1.0 2 23 332 354 331 354 0.94 7 21 6.3 5.5e+02 1.9 1.2 2 23 361 381 360 381 0.85 8 21 0.0019 0.16 13.0 0.2 1 23 386 408 386 408 0.98 9 21 8.6e-05 0.0075 17.2 0.8 1 23 414 436 414 436 0.98 10 21 0.11 9.5 7.4 8.5 1 23 443 465 443 465 0.96 11 21 0.1 9 7.5 2.0 1 23 471 494 471 494 0.93 12 21 0.00013 0.011 16.6 0.9 1 21 502 522 502 523 0.95 13 21 0.00068 0.059 14.3 0.7 3 21 631 651 630 652 0.89 14 21 0.00047 0.041 14.9 1.3 1 23 685 708 685 708 0.96 15 21 3.6e-05 0.0031 18.4 0.2 2 23 714 735 713 735 0.96 16 21 0.72 63 4.8 1.5 2 20 739 757 739 759 0.91 17 21 0.001 0.089 13.8 0.2 1 23 785 808 785 808 0.91 18 21 0.0012 0.1 13.6 0.8 1 23 814 836 814 836 0.92 19 21 0.069 6 8.0 0.1 1 23 842 864 842 864 0.97 20 21 0.041 3.6 8.7 1.0 1 23 870 893 870 893 0.94 21 21 0.00047 0.041 14.8 0.8 2 23 900 922 899 922 0.96
Sequence Information
- Coding Sequence
- ATGAGTCGCCAAGTGGACATAAAAGCGTTAGTTTCACACGTAGTGCGAGGAGatggtataaataaatgtagaatatgtATGGGAGACACTTCGGAAGGCCATGTTTTTCTTGGCGATACAGTTTTGATGGACGGAGATCAACCTGTAACTTTATCGGAGCTGCTGGAGACAATAACAGGAGTTCAGATGCCGATCAATGAGGACTTGCCTGTCAACTTATGCTCGTTGTGCTCGATGTCCGCGTTAAACGCAGCCGATTTCCGCACCGCCTGCAGGCGTGCTGCCCACAAGTGGGAGACTATTGTACAACTGCTGGCCAACATACCACAACACGCTAAGGACAGAACACTCTTCGCCTTAGTAGAAGAAGACCAGATGGTCCTTCTAACTGATTGCGATAGTATTTCGTCAAGTAAAACAGCGGCTCAAAAACTAACAAGAAAGATGAGGCCTATACAAAAGTCTGAGAATGTTAGGACATGTCAAAAACAACGTTATGAATGTCCAGATTGTGGCAAACAGTTCGGCTATGTCCACCAGTTGTATCGACATTTAAAGGAATCGACAGATTTTAAACGAGCTTGTTATATTTGCGCGAAAATCATGAATAGAGAGGAGTTAGTGAGACATTTGAAAGAACATCACAATCAGAAGCCTTATGACTGTAAAAAGTGTCCTGCCTTATTGCCTTCGTATCAACAATATGTTCAGCATTTACGACAAGCACATTCACAAGGTTCTTGCACTTGTGGTGACTGCGGACGAAGTTTCAAGACTTCCAACAGTTTCAGAGCTCATCTCTCAGTACATACGATAAAGTCTTGTCCGAGCTGTGATAAGGTATTCCGTAACCAAACTTGTTATTTGTACCACGTGAAGAAATGCTGCAATTTAGAAAGAATAAAGAGTCATAAGGGTATGTTAGAAGTGAAGAATAAATGGAGCGAGAAGAAGGTAAAAGTCGGTTTGCGGGGAAGGATCGATAAGGAATGTATCTGTGATTATTGTAATAAGAAGTTTGCTGGCAAGAAGTTTATATCGGCTCATATACAGATAGTCCACATGAAGAATACGCACAGTCCATGCGTCCACTGCGGAAAGTTCCTCGCTGCGGCTCACATGTCAGAGCACGTGAAGAAGCATCAAGATTTGTCATTCAAATGTGACCTTTGTGGTATTGTTTTAAGGACTAAATTAGGTTATATCCAGCATTTACGTTTGCATAGTGGTGAAAAGCCGTACCCATGTAGTAAATGTTCAGCAAAGTTCCGACTACCCTACATGCTGAAGAAGCATATGTCAGTTCACAGTGAAAGACAACTTCCGTTTGAATGTAACTTGTGTCACGAGAAATTCAGTACCTGCTCAACAATGCTGAAGCACTGCAgGATACATTCAGGAGAAAAGCCTTATGAATGCAAGAAATGTGGGGAAAGATTCCTGTCAACGTCCAGACGTCTGGATCATATGAAGAGGCGACATATGAACACTGAGGACATGCCTCATAAGTGTAGGGAATGCTCGGCTAGTTTTATTAGACCTTCATTGCTCAAGAAGCACTATAAAGTTATGACAGAAGACGATTTCTGCCCGCGTGGTATCTGCGTAACTTGTACAGACGCGGGCATCCACGCTTATGAGTTCCGCATGCTAACGAAGAATTCCCACAAAGTGTGGTCCAACTGTGTGGACAATATAGACAAGGTTGTCGACAGCGGAAAACCACCTAATTCCTTATACACCATAATGAGGGAAGACCTATCAGTTCTGACGGTTAACAACTTTAAAGGCGACTCCAAATCACTCCTGGATCATCTCGTCAATCGTGTTTCTAAAAAGAAACCAGTCGAAGTGGAGAAAAAGCCAAGAGCGGCGCGCTCGGGCCCGCCCTGCAAGTGCATTGATTGCGGGAAACAATTTAATAGCCCGTACTATCTTACCTTGCACTTAAAGAACAGTGGCCAGAAAGAAGCTTGTGCTCTGTGCGGTACTATGGTGTTTAGAGGTATGGAAATGAAGGAACACCTTGAGGCGTCCCACGGGAAATTGGTCCACATGTGTACAGATTGTCCGATGCTGTTTACTTACGATTACGAGTTGCAACAACACATGAAACGAGCTCACAGACCAGGCGCTTTAACATGCTTCGATTGCGGAAGAACCTTCCCAAGGAATGCATCTTTCGAAGTTCACGCACAGATGCATGCGGTGAGGACGTGCAGAGCTTGCGGCGCTCAGTTCACGAACAGAGCCTGCTATAGGCAGCACCGCTCCAATTGTGAGCCTGGAGCGAAACCCGATACAAAAGATGTACCTCGTAGTCGACGCTCTAATATACGGGATCCGGCAACTTTTATATGCGATTATTGCGGCAAGACCTACCTATCGAGACCTCAGCTGAAGAACCATATAGTATGGATCCATATGGATATAAGACCGCATCAGTGTCAATGGTGCGGGAAGAGGTTTTATACTCCGACACGTCTCGCGGAGCACAGTGTTGTTCACACGCGGGAAAGGAACTTCGAATGTGACATTTGTGGCGCGAAACTCGTTTCCAAGATGGCGGCGGTGTACCATAGACGAAGGCACACGGGTGAAAAGCCCTACGAATGTCAGTCTTGTGGGGAGAAGTTTATATCTTCTTCGCGCAGATCTGAGCATGCGAAGCGTCGGCATGGGTTAGGATCTAAACTGCAGTGTATGGACTGTTCCGCAACTTTTGTGAGAATCCACGAGTTAAAGAAGCATATTCTTAAAGTTCACGGTACTCATATTTCTGATGCGTCATCAACAACTAGAAGGTAG
- Protein Sequence
- MSRQVDIKALVSHVVRGDGINKCRICMGDTSEGHVFLGDTVLMDGDQPVTLSELLETITGVQMPINEDLPVNLCSLCSMSALNAADFRTACRRAAHKWETIVQLLANIPQHAKDRTLFALVEEDQMVLLTDCDSISSSKTAAQKLTRKMRPIQKSENVRTCQKQRYECPDCGKQFGYVHQLYRHLKESTDFKRACYICAKIMNREELVRHLKEHHNQKPYDCKKCPALLPSYQQYVQHLRQAHSQGSCTCGDCGRSFKTSNSFRAHLSVHTIKSCPSCDKVFRNQTCYLYHVKKCCNLERIKSHKGMLEVKNKWSEKKVKVGLRGRIDKECICDYCNKKFAGKKFISAHIQIVHMKNTHSPCVHCGKFLAAAHMSEHVKKHQDLSFKCDLCGIVLRTKLGYIQHLRLHSGEKPYPCSKCSAKFRLPYMLKKHMSVHSERQLPFECNLCHEKFSTCSTMLKHCRIHSGEKPYECKKCGERFLSTSRRLDHMKRRHMNTEDMPHKCRECSASFIRPSLLKKHYKVMTEDDFCPRGICVTCTDAGIHAYEFRMLTKNSHKVWSNCVDNIDKVVDSGKPPNSLYTIMREDLSVLTVNNFKGDSKSLLDHLVNRVSKKKPVEVEKKPRAARSGPPCKCIDCGKQFNSPYYLTLHLKNSGQKEACALCGTMVFRGMEMKEHLEASHGKLVHMCTDCPMLFTYDYELQQHMKRAHRPGALTCFDCGRTFPRNASFEVHAQMHAVRTCRACGAQFTNRACYRQHRSNCEPGAKPDTKDVPRSRRSNIRDPATFICDYCGKTYLSRPQLKNHIVWIHMDIRPHQCQWCGKRFYTPTRLAEHSVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYECQSCGEKFISSSRRSEHAKRRHGLGSKLQCMDCSATFVRIHELKKHILKVHGTHISDASSTTRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -