Ppro003932.1
Basic Information
- Insect
- Papilio protenor
- Gene Symbol
- Clamp
- Assembly
- GCA_029286645.1
- Location
- JAGSMZ010000006.1:4158262-4166864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 5e-05 0.0044 17.9 0.7 1 23 119 141 119 141 0.99 2 27 7.2e-05 0.0063 17.4 2.3 1 23 325 347 325 347 0.97 3 27 3.7e-05 0.0032 18.3 0.1 1 23 353 375 353 375 0.98 4 27 5.6e-06 0.00049 20.9 3.0 1 23 381 403 381 403 0.99 5 27 3.1e-06 0.00027 21.7 0.4 1 23 409 431 409 431 0.98 6 27 8e-06 0.0007 20.4 0.7 1 23 437 459 437 459 0.98 7 27 0.00014 0.013 16.5 0.2 1 23 465 487 465 487 0.96 8 27 5.9e-05 0.0051 17.7 0.4 2 23 492 513 491 513 0.97 9 27 1.7 1.4e+02 3.7 0.1 1 12 519 530 519 531 0.89 10 27 6.2e-05 0.0054 17.6 0.3 2 23 531 552 530 552 0.97 11 27 1.7 1.4e+02 3.7 0.1 1 12 558 569 558 570 0.89 12 27 6.2e-05 0.0054 17.6 0.3 2 23 570 591 569 591 0.97 13 27 1.7 1.4e+02 3.7 0.1 1 12 597 608 597 609 0.89 14 27 6.2e-05 0.0054 17.6 0.3 2 23 609 630 608 630 0.97 15 27 1.7 1.4e+02 3.7 0.1 1 12 636 647 636 648 0.89 16 27 6.2e-05 0.0054 17.6 0.3 2 23 648 669 647 669 0.97 17 27 1.7 1.4e+02 3.7 0.1 1 12 675 686 675 687 0.89 18 27 6.2e-05 0.0054 17.6 0.3 2 23 687 708 686 708 0.97 19 27 1.7 1.4e+02 3.7 0.1 1 12 714 725 714 726 0.89 20 27 6.2e-05 0.0054 17.6 0.3 2 23 726 747 725 747 0.97 21 27 1.7 1.4e+02 3.7 0.1 1 12 753 764 753 765 0.89 22 27 6.2e-05 0.0054 17.6 0.3 2 23 765 786 764 786 0.97 23 27 1.7 1.4e+02 3.7 0.1 1 12 792 803 792 804 0.89 24 27 6.2e-05 0.0054 17.6 0.3 2 23 804 825 803 825 0.97 25 27 1.7 1.4e+02 3.7 0.1 1 12 831 842 831 843 0.89 26 27 6.2e-05 0.0054 17.6 0.3 2 23 843 864 842 864 0.97 27 27 0.00014 0.013 16.5 0.2 1 23 870 892 870 892 0.96
Sequence Information
- Coding Sequence
- ATGTTCACGACGAATACTGTGCAAGCCGGTAGTGTTCCGACCCTTCAGTATCAAGAGCATCCAACTCAGAAATCACAAGGCAAAAACATGGAAAACGTACAACAAAAGAATCCACAACAGACCCAGCAGACCCAACAGGAGTTTCCCACATTTTGTTACACAACCAATGTAAATATGATAGGAAAAATTGGCACTGGTACCACAACGGGTGCTGGTGGAGTGAACATAGCGCAATTGACCACAAGTGATGACAAGACTTGTTATATAGCTCAGCCATTCTCCTACAATTATGCCTTAGTTAATCAAATGCAAATCGCACCGAATGGAATCCAGAATACAATATCAAATATAAGCTTTAAATGTGATGTGTGCGGCCTGATGTTTGGACATTTGACTCTTCTTAATGCTCATAAAAGAATACATGCACAGGACACAGATAACAATATAACTGTGGTGGCGACAGGTGTCAGTACGGCCAATGAAGTGACAATGCCACCtcatatacaaattatttcttCCGACCCAACCGATCAGACACAACATCAAGTGCATATACAAGAGACAAAACCTGTAGTAATAGATAAGGTCCAGAAGTGTATAACATGTGGAGgtccaataaataataatcccAAAAGAAAAGGTCCGAAGCTTATAAGGTGCGAAAATTGCATTGCACAGGATTCTGTTGACCAACAGAGAAATAGTCAATTGAATTCAACACAACTGTTGGTGACATCTGATGAGAATGTGAAGTTTGAAGTTAGTGGAGTGACCTCGGTGCAGGGTGCAGACCCACTCGACACCGCACAGGCCAACCACCAGACACAGCCGCAGAAACCTTTGCCTGGACATCATCCTGTGAAGAAAAGAACATTAGCATCAGTGACGAAATGTCAGAACTGTAATGGTTCAGGTATAATATTCATAGGCGGTAATAAGAATAAGCACAGTCAAGCGGATATGGACAAACGTTTCCATTGCAATATATGCGGAGGTTCCTTCTCGAGGTACTCCTCCCTCTGGTCGCACAAAAAGTTACATTCCGGAGAGAAGAATTTCAAATGTGGCATCTGTGGGATAGCGTTTGCTAAAGCAGTCTATCTAAAGAATCATTCAAGGATACATACAGGAGAAAAACCTTATAGatgtaGTACATGCGGTATGCAGTTCTCTCAATCGCCGCATTTGAAAAATCATGAAAGAACACATTCAGGGGAAAAACCATATGTTTGTGAGGTATGTGACAAAGGGTTCGCGCGACACGCTACGCTGTGGAATCACCGGCGCATTCACACTGGCGAGAAACCATACAAATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGGTTCGCGCTCAAGAGACATCGCGGCATACACGATAAATATGGTAAATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCTGACAGATGTGACACGTGCGGCTCCGCGTTCAGCCAGGCGGCGCACCTGAAGAACCACGCGAAGGTGCACTCCGGGGAGAAGCCCTTCAAGTGCGACATCTGCACCGCCGCCTTCGCAGACAGGTTCGCGCTCAAGAGACATCGCGGCATACACGATAAATATGGTAAGTTATAA
- Protein Sequence
- MFTTNTVQAGSVPTLQYQEHPTQKSQGKNMENVQQKNPQQTQQTQQEFPTFCYTTNVNMIGKIGTGTTTGAGGVNIAQLTTSDDKTCYIAQPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLTLLNAHKRIHAQDTDNNITVVATGVSTANEVTMPPHIQIISSDPTDQTQHQVHIQETKPVVIDKVQKCITCGGPINNNPKRKGPKLIRCENCIAQDSVDQQRNSQLNSTQLLVTSDENVKFEVSGVTSVQGADPLDTAQANHQTQPQKPLPGHHPVKKRTLASVTKCQNCNGSGIIFIGGNKNKHSQADMDKRFHCNICGGSFSRYSSLWSHKKLHSGEKNFKCGICGIAFAKAVYLKNHSRIHTGEKPYRCSTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRFALKRHRGIHDKYGKCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRFALKRHRGIHDKYGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -