Ppro006921.2
Basic Information
- Insect
- Papilio protenor
- Gene Symbol
- -
- Assembly
- GCA_029286645.1
- Location
- JAGSMZ010000012.1:305104-308979[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.6e-10 4.5e-07 30.0 0.0 3 39 181 217 179 222 0.89 2 5 4.9e-10 1.4e-06 28.4 0.1 2 39 234 271 233 276 0.89 3 5 2.5e-12 7.2e-09 35.7 0.4 2 39 288 325 287 332 0.86 4 5 1.8e-16 5.3e-13 49.0 0.0 4 38 342 377 339 381 0.92 5 5 1.8e-16 5.3e-13 49.0 0.0 4 38 487 522 484 526 0.92
Sequence Information
- Coding Sequence
- ATGCCCGGTTACGGAGGTTTCTTAGTAAAACGCGAGCCGTCGTCCGAGGGCGACGACAGCAGCTCACAATCTGCTCACGAGTTTTACTACCATCAGTCGACCGCCCTGCCGGTGGTGAAGGTGGAAGCGGCCGAGCACCTCGAGCAGGATGCTTCCTCACACATTCTGCATCACTTGCAGGTGGGTGTGGGCCTGGAGCTGTgtccgcccgcgcccgccgcgccggccgCCACGCCGGTGCacgcgcgccgcacgccgcacgacgcgcccgcctcgccgcgctcgccgcacgccgcgcactgCTTCGAGACCCTCGAGCCCGCGCGCGCCTCCACCGGTACGACACTCCTCGATCGCCACTTGAAGCTGATGAAGGACTCCTCGGAGCCCGACTTCATGTCTCTGCTAAACGTCAAGGATGAACCGCTCTCGGAGGGTGAGCAGCAGGTGGCGAGCGACGAGGCGAGTTCGTGCGGTGGCAGCAGCGAGGGCGCggagggcggcggcggcagccCGCCCGGCGCGCGCGGCTGGGGCCCGCGCGACATGCAGCGCGCGCTGCAGGCCCTGCGCGACCACCGCATGACACTCACCAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGgcagcgcgcgcggcggcTCGGCATCGACACGCCGAAGCGCGAGGCGACCGCGCGCAGCTGGGGCGAGGCCGAGCTGCGCGCCGCGCTGGCCGCCCTGCGCGACCACCGCATGACACTCACCAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGgcagcgcgcgcggcggcTCGGCATCGACACGCCGAAGCGCGAGGCGACCGCGCGCAGCTGGGGCGAGGCCGAGCTGCGCGCCGCGCTGGCCGCCCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGAATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCGAGCTGtcgcgcgccgcgcccgcgccctgGTCCGAGCGCAGCATGGCGCTGGCGCTCGACGCCGTCAGAGTGGGCCAGATGTCTATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGCGCCCGCCGCAGAGTGTGCAGTACCAGCAGTCTGACACACAGAACAATTACGAAGTGGATCAGAACATGCAGCCGGGTCAAGAGTCTCTGTGTTACTACCCGCTGGCGCACGCGATGGCGCAGGAGGCGCAGGAGGCGGCGCAGGCGCAGCTGCAGGTGCCGTACAGCCAGCTGCTGGGGGAGGCGCACGGCGTGCTGGCGCCGTGGCCGGagtgcgggggcgggggcggggccgggggcgggggcgggggcgcggggctGCTCTACGCCGGCAGCGAGCTCGCCACCAtggcgccgcgcccgccgccctgGTCCGAGCGCAGCATGGCGCTGGCGCTCGACGCCGTCAGAGTGGGCCAGATGTCTATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGCGCCCGCCGCAGAGTGTGCAGTACCAGCAGTCGGACACACAGAACAATTACGAAGTGGATCAGAACATGCAGCCGGGTCAAGAGTCTCTGTGTTACTACCCGCTGGCGCACGCGATGGCGCAGGAGGCGGCGCAGGCGCAGCTGCAGGTGCCGTACAGCCAGCTGGTGGGGGAGGCGCACGGCGTGCTGGCGCCGTGGCCGGagtgcgggggcgggggcgcggggctGCTCTACGCCGGCAGCGAGCTCGCCACCAGTTGA
- Protein Sequence
- MPGYGGFLVKREPSSEGDDSSSQSAHEFYYHQSTALPVVKVEAAEHLEQDASSHILHHLQVGVGLELCPPAPAAPAATPVHARRTPHDAPASPRSPHAAHCFETLEPARASTGTTLLDRHLKLMKDSSEPDFMSLLNVKDEPLSEGEQQVASDEASSCGGSSEGAEGGGGSPPGARGWGPRDMQRALQALRDHRMTLTKASATYGIPSTTLWQRARRLGIDTPKREATARSWGEAELRAALAALRDHRMTLTKASATYGIPSTTLWQRARRLGIDTPKREATARSWGEAELRAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIELSRAAPAPWSERSMALALDAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKRPPQSVQYQQSDTQNNYEVDQNMQPGQESLCYYPLAHAMAQEAQEAAQAQLQVPYSQLLGEAHGVLAPWPECGGGGGAGGGGGGAGLLYAGSELATMAPRPPPWSERSMALALDAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKRPPQSVQYQQSDTQNNYEVDQNMQPGQESLCYYPLAHAMAQEAAQAQLQVPYSQLVGEAHGVLAPWPECGGGGAGLLYAGSELATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -