Ppol015495.2
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- ZNF134
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000022.1:2480383-2494621[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1 91 4.3 0.5 1 23 255 278 255 278 0.95 2 10 1 91 4.3 0.5 1 23 540 563 540 563 0.95 3 10 0.0025 0.22 12.5 0.8 1 23 623 646 623 646 0.96 4 10 0.00011 0.0097 16.8 3.4 2 23 651 672 650 672 0.96 5 10 0.35 31 5.8 0.2 2 23 680 700 679 700 0.95 6 10 0.00042 0.037 15.0 1.0 1 21 706 726 706 731 0.94 7 10 0.0011 0.1 13.6 0.3 1 23 739 762 739 762 0.94 8 10 0.00029 0.026 15.5 0.2 1 23 768 791 768 791 0.97 9 10 2.3e-05 0.002 19.0 1.1 1 23 801 823 801 823 0.94 10 10 0.00014 0.012 16.5 1.7 2 23 830 852 829 852 0.96
Sequence Information
- Coding Sequence
- ATGAATCAGATCTGTAATACTTGTCTTAGTTCCGATCGTGATATAATTATTTTAAACGAACAATCGGATTTATTCCAAATCTTTCGTCTTTTAACTTACGATTTCGCGGGTGAATTTGACCCATTAAGTAGCCAGACACTAGAAGTGTGTTGGGAATGTGTTGCCATGTTGAGGAAATTCACGAAATTCAGAGCAAAAGTACAAACAGCTCAACAACATTTACGAGTCATCAACGATTCACAGGAAAACATGGATCATACATATTTATCCCAATCTTTATCATCAATGGAAATGATACTAAAATTAGGTTATGACAAAATATATATAGATACAACGGCCAAGTTATTGACGGAGTGGTCACCTCATTATATAGAAATAAGTACATCGGAGAATATAAAAAATGAACAGTATGATATCGCTCAAGTTGTGAGAGAGAATATCAATTTGGAATTGGATGAAAATATCCTAACTGTTCCATCTGTGGTTATTGATGGTCAAACGGTACCTCATATCATGATAAATGCTGAACCTTTAGCCGCGGAGACGGGTTACAAGGAATCAAATAATTTGATCATACCGGAACTTACAGTCAGTTCATTAGAAGTTCCCAGTTTAAATGCAAATGTTGAACAAATACAAAAATTTGTAATTGAAGAAAAACCAAATTTAAAGGCTGGGTATATAACGGAATATATGAATGAAGAGGACATGTTGGCATTTAGGGAAGAAGCGAAAAAGAAATTCGCCTATGCAAGTGCTATACATAAATGTGAACTTTGTATTATTGGTTTCTACACACAACAGCAAGTCGAAGAACATTACGAACGCGCACATAAGGCTGTAAGTCAACACACGGCCACTACTTGCGGCACATTTAGAGCCTCCACTTGTGGCACATTCAAGGCCTCTTTGCGGCACATGCAATGCCACTTTATGTGGCACATGCAGGGCCACTACGTGCGGCACGTTGACCCATTAAGTACCCAGACACTAGAAGTGTGTTGGGAATGTGTTGCCATGTTGAAGAAATTCACAAAATTCAGAGCAAAAGTACAAACAGCTCAACAACATTTACGAGTCATCAACGATTCACATGAAAACATGGATCATACATATTTATCCCAATCTTTATCATCTATGGAGATGATATTAAAGTTAGGTTATGACAAAATATATATAGACACATCGGCCAAATTATTGACGGAGTGGTCAGCTCATTATATAGAAATAAGTACATCGGAGAATATAAAAAATGAACAGTATGATATCGCTCAAGTTGTGAGAGAGAATATCAATTTGGATTTGGATGAAAATATACTAACTGTTCCATCTGTGGTTATTGATGGTCAAACGGTACCTCATATCATGATAAATGCTGAACCTTTAGCCACAGAGACGGGTTACAAGGAATCAAATAATTTGATCATACCGGAACTTACAGTCAGTTCATTAGAAGTTTCCAATTTAAATGCAAACGTTGAACAAATACAAAAAGTTGTAATTGAAGATTTAAAGCCAGATTTAAAGGCTGGGTATACAACGGAATATATGAACGAAGAGGACATGTTGGCATTTAGGGAAGAAGCGAAAAAGAAATTCGCCTATGCAAGTGCTATACATAAATGTGAACTTTGTATTATTGGTTTCTACACACAACAGCAAGTCGAAGAACATTACGAACGCGCACATAAGGCTCTGCACGTGCAGACACACCACGAGAAGAAGTTGCCGAGCTCACTCATCAAGATCGGGGATATTAAGCAAGTTGAAAAAATGCGTCAGAAAAAGAAAAAAAAAGATGCGCCATCGACCACTCCTGATCCAAAGGGTTTAAGAAAATTGCTTTCAAAAACTACAATTGTCGGATATCAATGTTTAGAATGTGATATGTTCTTTAAGAATTCCCGAGCTCGTAAAGCGCATGTCGCCAGATATCATAGAGAAGGATTACAATGTGATCATTGTAAGAAGAGATTTGTGAACAGAACTACATTAGTTACACATCTCAAGTTACATGAAGGTCCTCCACCGAGGAAACCATGTCCTATCTGTTCCAAACTGGTCCGAGTTGTCCAGTTAAAATATCACATACAACGACATGAGAATAAAGGTCGGTACGAGTGTACCGATTGTAACAAAGTGTTCTCCTATCTCACTACGTACCAGGGACATCTTAAGTACTCGAGGGCACATGCTTCAGAACAAGTTCTCAAGTTCCCATGTCCGATGTGCAACAAGGGATATCCTACAAAAGAGGCGATGCAGGATCACTTCAACTATCAACATCTCGGCAAAACATCACACAAATGTCCGCTCTGTGATAAGCCTATAGCGTCTAGAGCTAACGTAGAGCGCCATCTAATGAGGGTTCACGGAGAAAAGAAGGAGAAACCAAAGAACCACGTCTGTCAGCAGTGTGGGAAGGGATTTACTGACAAGAAATCATTAAACCAACACGAAGTTATCCATTCAGGTGACAGACCATTATCTTGTAACATCTGTTATCAGACGTTCAAACAAAAAGCATCTCTATACACTCACAGGAAGAGAGTTCACAATATAATGCCCGCGAAACGTGTCGTTGAATTCATTGATAATGATAAAACTAAGGTAGAAATTAAATCAAGTTGA
- Protein Sequence
- MNQICNTCLSSDRDIIILNEQSDLFQIFRLLTYDFAGEFDPLSSQTLEVCWECVAMLRKFTKFRAKVQTAQQHLRVINDSQENMDHTYLSQSLSSMEMILKLGYDKIYIDTTAKLLTEWSPHYIEISTSENIKNEQYDIAQVVRENINLELDENILTVPSVVIDGQTVPHIMINAEPLAAETGYKESNNLIIPELTVSSLEVPSLNANVEQIQKFVIEEKPNLKAGYITEYMNEEDMLAFREEAKKKFAYASAIHKCELCIIGFYTQQQVEEHYERAHKAVSQHTATTCGTFRASTCGTFKASLRHMQCHFMWHMQGHYVRHVDPLSTQTLEVCWECVAMLKKFTKFRAKVQTAQQHLRVINDSHENMDHTYLSQSLSSMEMILKLGYDKIYIDTSAKLLTEWSAHYIEISTSENIKNEQYDIAQVVRENINLDLDENILTVPSVVIDGQTVPHIMINAEPLATETGYKESNNLIIPELTVSSLEVSNLNANVEQIQKVVIEDLKPDLKAGYTTEYMNEEDMLAFREEAKKKFAYASAIHKCELCIIGFYTQQQVEEHYERAHKALHVQTHHEKKLPSSLIKIGDIKQVEKMRQKKKKKDAPSTTPDPKGLRKLLSKTTIVGYQCLECDMFFKNSRARKAHVARYHREGLQCDHCKKRFVNRTTLVTHLKLHEGPPPRKPCPICSKLVRVVQLKYHIQRHENKGRYECTDCNKVFSYLTTYQGHLKYSRAHASEQVLKFPCPMCNKGYPTKEAMQDHFNYQHLGKTSHKCPLCDKPIASRANVERHLMRVHGEKKEKPKNHVCQQCGKGFTDKKSLNQHEVIHSGDRPLSCNICYQTFKQKASLYTHRKRVHNIMPAKRVVEFIDNDKTKVEIKSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -