Ppol010165.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- -
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000006.1:2598570-2606163[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0033 0.29 12.2 3.3 1 19 390 408 390 413 0.94 2 11 6.3 5.5e+02 1.8 3.0 3 10 433 440 432 456 0.80 3 11 3.9e-05 0.0034 18.2 0.7 1 23 465 487 465 487 0.99 4 11 1.7e-05 0.0015 19.4 0.2 1 23 499 521 499 521 0.98 5 11 0.00024 0.021 15.7 3.8 2 23 528 549 527 549 0.96 6 11 0.00035 0.031 15.2 4.6 1 21 555 575 555 577 0.95 7 11 0.00081 0.071 14.1 0.5 1 21 583 603 583 604 0.93 8 11 3.7 3.3e+02 2.6 0.7 14 23 649 658 646 658 0.91 9 11 0.00024 0.021 15.7 3.8 2 23 665 686 664 686 0.96 10 11 0.00035 0.031 15.2 4.6 1 21 692 712 692 714 0.95 11 11 0.00081 0.071 14.1 0.5 1 21 720 740 720 741 0.93
Sequence Information
- Coding Sequence
- ATGGAAGTATTTTGTAGAGGATGTTTAATTCAGTATAACGATCCGTCTGAATTGATACAGTACTCAGAAAAGAATAGAAGATTATTTATATATTGTACTGGTATACAGGTTAAACTAAATGACAGTTTTACATTCCAATTATGCAAAGAATGCTACCTCAATATGCAAGTTAGTTGTAAATTTAAGAAATTATGTCATAATTCTGATAAGAGAATAAAAAAGTACTTGTCTTTAAAAGAGGTTGGTGAAAATATTGATTTGCCTACTTACCTCAAGACAGATGATGACTCAATAACTTTCAGGCTTCCTTTGCTTGGGAATAGTACACCAAGCAATAATAATGTTAAAGATGAGGACAATGAATCAACATGTACCAGTATACAAAACTTTATCAACGACATTATGGCGTCAGAGGAGTTACCAGCCACGGAAGCTCGCATTATACGGGAAGTGATTGAGGAAGAAGCCGATGTTCTGGATGATTCTTTGGACTCACATTGGCTTCAAGATGATGTATCTATTGACAACAGTTGCAAACTAGATTTCAGTTTCAGTCCATTTGTAACACCTCAGTATACTAATGAAGATAGTCTAAAGAAATTTGAAGATGAAATTACAAATAAAAGATCTGATGATGTTGCTACATTTAAAATACCAGCAGACATCAGTCTAAAGGTAGATCCTAAGTTGAAAGAATATGATACAACGGAAATAAAATGTACAATAGACCAAAATATAGAAAATGCCTTGCTAAATGAAAATAATACAAATGTCTTCTTAGAAGATCTTCTTGTTACACCTCCATTACAATCAAATATATCTGGACCACCTACTCCTGTAATAAATAACATACTATTTGGTGAACAATTAGAAAGCGATGGTGAAAATTCTTTAATTAATAAAATAGGAATGTGTATTGAAGAATTTAAACCTGTACAATCTGATAGTGATGTATTGGAAGATATCTTAGCTGAAACTGTCAAAGACTTTAATGTAGACCAAGATATAGAAGATAGTGATATTGAAATGAAAATGGAAACATTAAAAGAAAGAAATTCCTACAAAAACAAAGAAAATAGAAAAGATATATGCAATAGTGATGTAAAAACAAAACAGATTGAAACAAAGTGTTCATCACCGGATGAAAATAAATATAATATAACTAATTTCTATTGCAAAATGTGTAACAAACAGTTTAAGAATCTTGCCGCATTGAAAGTACACTGCGGGAGAAAACATAAATTAAGGATATCTAATAACAATTCGGATAACTCTAAATTGGGAAAACCTCGGATATGTGATTATTGTGGAAAAGTGTATCATCTGTATCATCGTTTGCCTTTATTTGTACAACATATTAAAAGCCACGCTGGTACAGGAACGTCACGTTCATATGTATGCCAAATTTGTTCATTGAAATTCACTTCAGAGGCTAAACTTAATATGCACCAGAATACTCACAAAACGAAACCTTCAGCTAAAAATCATAAGAAATTCGTATGCACTATATGTGGAGCTGGGAGTTCTTCAGCGACTAATTTGAAAACACATCTCAGACGACATTCTAAGAACTACACCTTGCACTGCGAGGAGTGCGGCATGGGCTTCTACAGGAAGACAGACCTCACCACACATTACAGGCATCATACTGGTGAAAAACCTTACGCCTGCGAGCACTGTAATCGTAAATTTGCACGACGAGATGTACTCAATAGACATATGAAATGCCACACAGACGAGAAACCATTTGTGTGTCCATATTGTGATATACGCTATTCCAAGAAACATTATTTGATAGGACATTTAGAAAAATGCAAGGCACGTCGGATCACATTGCCTCCCGAAGAAATGGACAATGAGAACAATGTCTCAGTGTATTACGCTACAGTTGTGGGCACAGATGTCGTATTAGATGAAACTGAAGAGAAAGAACTAGCATTAACGACTAATTTGAAAACACACCTCAGACGACATTCTAAGAACTACACCTTGCACTGCGAGGAGTGCGGCATGGGCTTCTACAGGAAGACAGATCTCACCACACATTACAGGCACCATACTGGTGAAAAACCTTATGCCTGCGAGCACTGTAATCGTAAATTCGCACGACGAGATGTACTCAATAGACATATGAAATGTCACACAGATGAGAAACCATTTGTGTGTCCATATTGTGATATACGCTATTCCAAGAAACATTATTTGATAGGACATTTAGAAAAATGCAAGGCACGTCGGATCACATTGCCTCCCGAAGAAATGGACAATGAGAACAATGTCTCAGTGTATTACGCTACAGTTGTGGGCACAGATGTCGTATTAGATGAAACTGAAGAAAAAGAACTAGCAATATGTGAGTCTACTTAA
- Protein Sequence
- MEVFCRGCLIQYNDPSELIQYSEKNRRLFIYCTGIQVKLNDSFTFQLCKECYLNMQVSCKFKKLCHNSDKRIKKYLSLKEVGENIDLPTYLKTDDDSITFRLPLLGNSTPSNNNVKDEDNESTCTSIQNFINDIMASEELPATEARIIREVIEEEADVLDDSLDSHWLQDDVSIDNSCKLDFSFSPFVTPQYTNEDSLKKFEDEITNKRSDDVATFKIPADISLKVDPKLKEYDTTEIKCTIDQNIENALLNENNTNVFLEDLLVTPPLQSNISGPPTPVINNILFGEQLESDGENSLINKIGMCIEEFKPVQSDSDVLEDILAETVKDFNVDQDIEDSDIEMKMETLKERNSYKNKENRKDICNSDVKTKQIETKCSSPDENKYNITNFYCKMCNKQFKNLAALKVHCGRKHKLRISNNNSDNSKLGKPRICDYCGKVYHLYHRLPLFVQHIKSHAGTGTSRSYVCQICSLKFTSEAKLNMHQNTHKTKPSAKNHKKFVCTICGAGSSSATNLKTHLRRHSKNYTLHCEECGMGFYRKTDLTTHYRHHTGEKPYACEHCNRKFARRDVLNRHMKCHTDEKPFVCPYCDIRYSKKHYLIGHLEKCKARRITLPPEEMDNENNVSVYYATVVGTDVVLDETEEKELALTTNLKTHLRRHSKNYTLHCEECGMGFYRKTDLTTHYRHHTGEKPYACEHCNRKFARRDVLNRHMKCHTDEKPFVCPYCDIRYSKKHYLIGHLEKCKARRITLPPEEMDNENNVSVYYATVVGTDVVLDETEEKELAICEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149847;
- 90% Identity
- -
- 80% Identity
- -