Ppol015347.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- -
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000022.1:168020-169636[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00017 0.015 16.2 2.3 1 23 69 92 69 92 0.95 2 10 0.00034 0.03 15.2 2.3 3 23 101 122 99 122 0.94 3 10 0.11 9.6 7.4 5.8 2 23 130 152 129 152 0.95 4 10 2e-06 0.00018 22.3 2.0 2 23 160 182 159 182 0.96 5 10 9.3e-05 0.0082 17.0 3.1 1 23 189 212 189 212 0.95 6 10 0.0011 0.096 13.7 6.4 1 23 218 241 218 241 0.95 7 10 3.5e-05 0.0031 18.4 0.3 2 23 249 270 248 270 0.97 8 10 0.0016 0.14 13.2 2.3 2 23 278 300 277 300 0.96 9 10 7.2e-05 0.0064 17.4 3.5 2 23 307 329 306 329 0.94 10 10 4.6e-05 0.004 18.0 4.2 1 23 339 361 339 361 0.98
Sequence Information
- Coding Sequence
- ATGGAATCATCAATAAAATCAGAAGCTGAAAAGAATGAGGAGGGTGAGGAAACACCAACAGTTTCTCCAGCACCCTCTGGACCTCTCAAATTCATTAGTGTAACAAGTTCCATACTCACAGAGGAACAACAGGAACAACGCGAGATGTATGAATCTGTCCTATCAACATGGAAGCCAGTCATGTTTCCCAAACGTACCAAACAGTACATCTGCCAGAAGTGCAATAAAGAATTCAAAAACTACCAAAATCTGTACCTTCATACCACAAGAGTACACTCTTCAGAAGATTCTGCGGTTATATGTGACATTTGTGTTAAAACATTTAAAAATAAACACTACTTATACATGCATAGAATGAACAAACATTACTCTGAATCGGAAAAATGTTACTGTCAGTTCTGCTTTCAAGAGTTTAGGACGCGAAGAGCGTTACACATGCACGTTAAACGTGCCCACCCCGCCACATTACCTGAAATAAAGTGTCCTGTATGCGGTAAAGAGTTCAGTGTGCCATATAAACTACGGCATCACATGGAATCCTGTCATATTGATGACAAAGATAAATATCAGTGTCCTATTTGTCAGAAACTTTATAAAACACATTTGAATCTTAACAGACATCTACAGTTTCAACATTCACAAGTGGAAAGACACCAATGTGTGTTCTGTCCGATGACATTCAAATCCCGTCATCATATGAAAAGGCATATTTTAAATATACATCCTCCGTTAGAATCTAAAGTGCAATGTCCGGAGTGTCTGAAAGAGTTCAAGAACGATCAGTACTTAAAAGAGCATATGCAAGTACATACGTCTTTTGAATGTAAAGTGAAATGCGATCAGTGTGACAAATACTTTCATTCAGCTGTACGTTTAAAGAAGCATAAGAAGATAGTACATCCAGATAAACCGAAGTTACGTTGCGAGAAATGCGACAAGGAGTTTGCGCACGCGCATTATTTGAAAAGGCACAATAATTCTGTGCATTTAGACGTTGATGAAACTAAATATGAACACGAATGTCCTCAGTGTAATAAGAAATTCAAAATTAAAAGATATTTGAACAACCATTTGCAGCGACATGAGCAACAACATTTGAAACGGATATCACAGATGATGGTGAAGACGGTGATGGGTGATGAACATAAGGCAGGCAACCCACCGAAGAGACGGGGTAGACCGAGAAAAGTTCACAAAGAATTTGAATTTATCAAATGTGAACCTGTTAGTAGTTCCGAGTCGGAATCCGAGGATACTGAGACGGAATCTGAGTGA
- Protein Sequence
- MESSIKSEAEKNEEGEETPTVSPAPSGPLKFISVTSSILTEEQQEQREMYESVLSTWKPVMFPKRTKQYICQKCNKEFKNYQNLYLHTTRVHSSEDSAVICDICVKTFKNKHYLYMHRMNKHYSESEKCYCQFCFQEFRTRRALHMHVKRAHPATLPEIKCPVCGKEFSVPYKLRHHMESCHIDDKDKYQCPICQKLYKTHLNLNRHLQFQHSQVERHQCVFCPMTFKSRHHMKRHILNIHPPLESKVQCPECLKEFKNDQYLKEHMQVHTSFECKVKCDQCDKYFHSAVRLKKHKKIVHPDKPKLRCEKCDKEFAHAHYLKRHNNSVHLDVDETKYEHECPQCNKKFKIKRYLNNHLQRHEQQHLKRISQMMVKTVMGDEHKAGNPPKRRGRPRKVHKEFEFIKCEPVSSSESESEDTETESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943106;
- 90% Identity
- iTF_01139136;
- 80% Identity
- -