Ppol004266.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- -
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000021.1:2359186-2362307[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00019 0.017 16.0 1.2 2 23 29 50 28 50 0.97 2 13 0.061 5.4 8.2 0.5 2 23 78 100 77 100 0.93 3 13 0.0012 0.11 13.5 2.4 3 23 155 176 154 176 0.96 4 13 0.00021 0.019 15.9 0.6 2 23 246 267 245 267 0.96 5 13 7.7e-05 0.0068 17.3 0.4 1 21 271 291 271 292 0.96 6 13 4.8 4.3e+02 2.2 0.4 5 23 337 356 334 356 0.87 7 13 0.13 12 7.1 0.2 2 23 382 404 381 404 0.95 8 13 0.00055 0.048 14.6 0.5 2 23 428 449 427 449 0.97 9 13 9.1e-05 0.008 17.1 0.0 1 23 453 476 453 476 0.96 10 13 0.011 1 10.5 1.5 1 23 480 503 480 503 0.98 11 13 4.8 4.2e+02 2.2 0.1 9 23 518 533 508 533 0.88 12 13 2.2e-05 0.0019 19.0 1.0 1 23 542 565 542 565 0.96 13 13 0.00048 0.042 14.8 2.2 1 23 574 597 574 597 0.96
Sequence Information
- Coding Sequence
- ATGACGTTAGCAAAAAGAAAGAATGCTGCGACCTTCCTTCATTTGACAACTGTTAGGCCATTCACACATATGGGCTCAACATTAAAATGTTTCTACTGCAAGAAATATTATTCTGACTTGTCAGATTTACTCGAACACACTTTGACACATGCAGTAGAAGATAAAGATACGATACTTAAGAAATATATAATGAATGGAAAACGTATGGTTTTAGTGGATATATCAATACTTAAATGTAGACTTTGTTGGAAACGATACTCTGATATAAATTCTATTAGGCAGCATTTAGAAAACGAGCACGATAAGAATTTTTTTATAGGGGTGAAGGCAACAGGAAGGTGCGTGGTATCACGAAAAAAAAAAGTTAGTTTCATATACTCCATACCGCAGCGAAACAATGCAGAACTCATACTAAATCATTCCAGCGCGTATCCTTTCAAAACGAGATACAGTCAAGTATTATGCTCACATTGTCACAAAGAATTTGAAATTCTCTCTGAATTAAAAGCACATATGGGAAAATATCATTTCAATGCTGATCATAAGAATGTATTATACGGTCTGAGAGGTCACTTGATGAAGATAGATATCAGTCATTTGGAATGCAAGCTGTGTAGACAAATTTTCCTCGATATAAACGATCTAATGTGTCATTTCTCACAAGAACACGATTTACCAGTTAATTTCAACGCCAGCTTTGGCGTTCTACCTTACAAATATGTCGATGATCATTGGGTGTGCGTCAGCTGCGGTAAAACTTATTCTAATTTCAGTGACATCAAACGTCACACATCTACCCACTTCATGAATTACAATTGCGAGAAATGTGGAACTACCTTCATATCTTATCAAGCGTTGAAAGATCATCAGAGACAGGTAAAATGCTATAGAACAGCTTACAATCCTCGGAACGGACGAGTCTTGAGACCGAGGAGTAACGCAGAAATAATATTGCAATGTTCCTCAGCTTACCCCTTCAGGACTTGGATGAGCAATTTGAATTGCATCTTCTGTAGAGTCAAAACTCGTGACCCTGTCTTCTTTCGAAAACATATGGAGGAAGAGCATAACACATACGATGTGCAAACTGCCTTTTATAAAAAAATGCGTAAAGCTTTCCTCAATGTCGACATAACTGATCTCAAATGTAAAGTATGTTCAATAAGTATTGATAAATTCGAAGACCTAATAGATCATTTAAAGAACGATCATAATCAACCTATAAAGTCTGATGCTCAATCCGGTTTACTCCCGTTTAGATTGAACGACGGATCAACATGGAGATGCGCGATATGTAACAATCAATTCATAAATTTCGATGCTTTAAGAAAGCATACTCAAACCCACTTCCATAACTATGTTTGTGATACTTGCGGTGAAGGATTTATTACGGAATCGGCTTTAATAACCCACAGTAAAATACCTCATGAGAACAAGTATTCTTGCTCCAGATGTAAAGCTACATTCACGAGTTTAAATGAGAGAAGTGCTCATGTAAAAACCAAGCATACATCCAAACCCTATGTATGTTTGTGCTGCGATGATAAGCCACGCTTCTCTTCGTGGGAGATGAAAAAGAAGCATCAATTGATAGTTCATAATTATGGAAGTGATGGTGACAGTTATGCGTGTACGTTATGTGGGAAATCATTCAAATCTCGGTCCGGGAAGTATAACCACATGTTAAGGATACATCGACGTATTAATTCAGAGTTGAGTTTCATTTGTTCGAAATGTTCAAGATCATTCACTAGTCAATTGTTTCTGGATAAACATATGGCTAAAAAACATACTATGTAG
- Protein Sequence
- MTLAKRKNAATFLHLTTVRPFTHMGSTLKCFYCKKYYSDLSDLLEHTLTHAVEDKDTILKKYIMNGKRMVLVDISILKCRLCWKRYSDINSIRQHLENEHDKNFFIGVKATGRCVVSRKKKVSFIYSIPQRNNAELILNHSSAYPFKTRYSQVLCSHCHKEFEILSELKAHMGKYHFNADHKNVLYGLRGHLMKIDISHLECKLCRQIFLDINDLMCHFSQEHDLPVNFNASFGVLPYKYVDDHWVCVSCGKTYSNFSDIKRHTSTHFMNYNCEKCGTTFISYQALKDHQRQVKCYRTAYNPRNGRVLRPRSNAEIILQCSSAYPFRTWMSNLNCIFCRVKTRDPVFFRKHMEEEHNTYDVQTAFYKKMRKAFLNVDITDLKCKVCSISIDKFEDLIDHLKNDHNQPIKSDAQSGLLPFRLNDGSTWRCAICNNQFINFDALRKHTQTHFHNYVCDTCGEGFITESALITHSKIPHENKYSCSRCKATFTSLNERSAHVKTKHTSKPYVCLCCDDKPRFSSWEMKKKHQLIVHNYGSDGDSYACTLCGKSFKSRSGKYNHMLRIHRRINSELSFICSKCSRSFTSQLFLDKHMAKKHTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144790;
- 90% Identity
- iTF_01144790;
- 80% Identity
- -