Ppol027615.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- -
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010052896.1:1-4312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.2 17 6.6 1.7 2 23 176 198 175 198 0.96 2 10 0.077 6.8 7.8 4.4 1 21 222 242 222 244 0.95 3 10 7.7e-05 0.0068 17.3 0.1 1 23 250 272 250 272 0.98 4 10 0.0041 0.36 11.9 0.4 3 23 279 300 277 300 0.95 5 10 0.00017 0.015 16.2 0.4 1 23 306 328 306 328 0.98 6 10 0.00025 0.022 15.7 0.3 1 23 334 357 334 357 0.97 7 10 0.0035 0.31 12.1 3.9 1 23 366 388 366 388 0.94 8 10 6.2e-06 0.00055 20.7 0.4 1 23 394 416 394 416 0.95 9 10 2.9e-07 2.5e-05 24.9 1.2 1 23 422 444 422 444 0.98 10 10 9.7e-05 0.0085 17.0 0.4 1 20 450 469 450 470 0.93
Sequence Information
- Coding Sequence
- ATGTCTTCTATTTTAAACGAAGCAAATCCTATTTGCACCATTTGCCTAATAGATGGTTCAGAAGTGAATAATATATCGCATGACGATGATGTTGTTACTAAAATTACAGAATGTTTTGGAAAAGATATTTTAATTACAATTCTGCCAAGAATTTGCAAATTATGTGTACAGAAAATTGAAGAGGTGTCTTTATTTCGTAAACTTATAATTTGCAACCAAAATATACTTTTAAATAGACTGAAAAACAATACTTACTTACCTAAAGACATAATCTATTTTAAAGTAGAGACGGAAAAAGAAAATAAAGAGCATTACAAATACACCAATGTTAAAATTGAACAAATCGAAAATGAAGACGCAAGTCAACCAAAATTTAGTGAAGTTTTAGATAATTCTGACTATGATGATAATCTTTCTTTATCTTTTATTAAAAAATCTAAAGAAGACATCCATAAGAATGAAAAGCATCCGAAAAAACAGGAAACATCATCAAATGAAATGGAAATAACAGAAAATCGTACAAACAAATGTTTAACATGTTTCAAATTATTTCTCACACAAACAGATTTAGTAAAACATTATAACAAAGAACATAAAAATAATAAAAATAAAGATACAAAAGATATTATTTATGAAATTGTTACAGATGATAATAATTTCAAATATAAATGCAGAAAATGTGATAAGTTATTTCAGAGCAAAGTTAAAATAAATAAACATATTTTATGTCATACACAAGAGAGACCATTTGTGTGTAAACTATGTGGTAGAACATACAGAGTAGCATCGGAGATAGTAAGACATGGCAGGGTACATGACGGTTTGAAAGTCCCTTGTAAGTTCCGATGTGGATATAGTACTGTATATAAAGGTGCTTTGAAGCAACATGAAAAACGACATAAGAAAGAATACACGTACACTTGTGATAAATGTAATAAAGGTTTTGAAGTATTAACATGGTATGAACAGCATCAGAACATACATACAGGGGATAAACCTTTTGTCTGTAATATTTGTGGAGTCGCCTTTCATATGGACAGGTACCTACAAGTTCATATCCGCTCAGTTCACCCACAATCATATGTTAGTGAAAGATTTCTATGTGTTCACTGTTCGAAGCCTTGCAGTTCTAAAAAAGCTCTTACACTACATTTAAAGGAACACGGTATAACGTCGAAGTTCCTCTGTGATATGTGCGGGAAAGTGTTCTCAGAAGCGAGGCTGTTGAGAATTCACAAGCGAATGCATCTCGATATCAGACCTTATAGCTGCAGTATATGCAAGAAGACGTTCGCAAAACGATCCAATTTGACTGTACATGCGCAAACTCACAGCGGCGAGAGAAGTCATGCCTGCGAGAATTGCGGCAAACGATACACGCAGAGAGGGACACTGCTTAGACATGTACAGAG
- Protein Sequence
- MSSILNEANPICTICLIDGSEVNNISHDDDVVTKITECFGKDILITILPRICKLCVQKIEEVSLFRKLIICNQNILLNRLKNNTYLPKDIIYFKVETEKENKEHYKYTNVKIEQIENEDASQPKFSEVLDNSDYDDNLSLSFIKKSKEDIHKNEKHPKKQETSSNEMEITENRTNKCLTCFKLFLTQTDLVKHYNKEHKNNKNKDTKDIIYEIVTDDNNFKYKCRKCDKLFQSKVKINKHILCHTQERPFVCKLCGRTYRVASEIVRHGRVHDGLKVPCKFRCGYSTVYKGALKQHEKRHKKEYTYTCDKCNKGFEVLTWYEQHQNIHTGDKPFVCNICGVAFHMDRYLQVHIRSVHPQSYVSERFLCVHCSKPCSSKKALTLHLKEHGITSKFLCDMCGKVFSEARLLRIHKRMHLDIRPYSCSICKKTFAKRSNLTVHAQTHSGERSHACENCGKRYTQRGTLLRHVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149784;
- 90% Identity
- -
- 80% Identity
- -