Basic Information

Insect: Papilio polyxenes
Gene Symbol: -
Assembly: GCA_026167825.1
Location: JAOPJD010000011.1:6066460-6075449[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00051 0.045 14.7 1.8 1 23 85 108 85 108 0.95

2 11 0.00035 0.031 15.2 0.8 1 23 115 138 115 138 0.98

3 11 0.023 2 9.5 0.1 2 23 160 182 159 182 0.95

4 11 5.8e-05 0.0051 17.7 1.0 2 23 206 228 205 228 0.95

5 11 0.00036 0.031 15.2 0.4 1 23 242 264 242 264 0.96

6 11 0.3 26 6.0 0.1 1 12 270 281 270 283 0.93

7 11 0.024 2.1 9.5 0.1 2 23 283 305 282 305 0.95

8 11 5.8e-05 0.0051 17.7 1.0 2 23 329 351 328 351 0.95

9 11 0.00036 0.031 15.2 0.4 1 23 365 387 365 387 0.96

10 11 3.4e-05 0.003 18.4 0.1 1 23 393 415 393 415 0.98

11 11 5.5e-05 0.0049 17.7 0.7 3 23 423 444 421 444 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00051	0.045	14.7	1.8	1	23	85	108	85	108	0.95
2	11	0.00035	0.031	15.2	0.8	1	23	115	138	115	138	0.98
3	11	0.023	2	9.5	0.1	2	23	160	182	159	182	0.95
4	11	5.8e-05	0.0051	17.7	1.0	2	23	206	228	205	228	0.95
5	11	0.00036	0.031	15.2	0.4	1	23	242	264	242	264	0.96
6	11	0.3	26	6.0	0.1	1	12	270	281	270	283	0.93
7	11	0.024	2.1	9.5	0.1	2	23	283	305	282	305	0.95
8	11	5.8e-05	0.0051	17.7	1.0	2	23	329	351	328	351	0.95
9	11	0.00036	0.031	15.2	0.4	1	23	365	387	365	387	0.96
10	11	3.4e-05	0.003	18.4	0.1	1	23	393	415	393	415	0.98
11	11	5.5e-05	0.0049	17.7	0.7	3	23	423	444	421	444	0.95

Sequence Information

Coding Sequence: ATGGACTGGAACAGTTGGAGTGTGGCGTATCACAGGAAGAAGATGCACGGCAAGACTGGACCCGAAGATGGCGGCGGCACTACCAAAATAGCTAGAAATGATTATAGATGTACCACACACAAAACAACTCACGGTTTTTACAAGCGTTCTCTCGCAGACTGCAAGAAAGCGGCTAAATGTCCAGGCTCATCTGAAGCTGGACCTGCCGCTACTGGCATATTAGGTTATGGTGGATTTCCTGTCGTCAAACATTTCTTATGCGAGGATTGCGGAAGGTCCTACTTACACTGGACTTATCTACAAGTACATCGACGTATGAAACACGCTAATGAGAATTTTCTATACAAATGTAACCAATGCGACCTGACCTTTCCCAACAGTTGGAGCGTGGCGTATCACAGGAAGAAGATGCACGGCAAGACTGGACCCGAAGATGGCGGCGGCACTACCAAAATAGCTAGAGATGATTATAGGATACCTTGTCGGGATTGTAGCATGGTGTTGCCAAACAAAACAGCACTTTATGCTCATAGACAGAAGGAGCATAGTGATACAACCATGAGCGATGaacaagGTACGGATGCGCAAGTGCGAACGCACGCACCTCTCGCGACCTCGTGCAGCAAGTGCGGGCATAACTTTAACGAGCCCAGCGCTCTCCAGCGACATCTCAAAGAGGTGCACGGACATGAAGGTGAGATGCGCGGCGAGAGAGGACGGTCGCACGCATGCGCGGTTTGCGGCCGCACTTTCCGCTCCGCCTCCGTACGCAACGAGCACCTGCGCGTGCACACAGGCGAGAGACCTTATCCTTGTGACGTCTGCGGGGTCGCCTTCAGACGGATACCTTGTCGGGATTGTAGCATGGTGTTGCCAAACAAAACAGCACTTTATGCTCATAGACAGAAGGAGCATAGTGATACAACTATGAGCGATGAACAAGGTACGGATGCGCAAGTGCGAACGCACGCACCTCTCGCGACCTCGTGCAGCAAGTGCGGGCACAACTTTAACGAGCCCAGCGCTCTGCAGCGACATCTCAAAGAGGTGCACGGACATGAAGGGGAAATGCGCGGCGAGAGAGGGCGGTCGCACGCATGCGCGGTGTGCGGCCGCACTTTCCGCTCCGCCTCCGTACGCAACGAGCACCTGCGCGTGCACACCGGCGAGAGACCTTATCCTTGTGACGTCTGCGGGGTCGCCTTCAGACGGTCGACAGCGATGCGTAATCATCGTCTGATCCATTCTGGCGTACGCGCATGGGCGTGCGCGCGCTGCCCCAAACGATTCCGCATACGCTCCGACCTGCGCACGCACATGCGACTTAAACATCCTACTTATATGATCGTATTTGAGATGAAAGGTTTAAACCCGACATATGAAGAGATAATGCAACACATCCGTGAAAATAATATCACTCAGGGTCGCATCATAGAGATCACTAAGATGTCCTTCGAAAAGATGAAAGGTTTAAACCCGACATACGAAGAGATAATGCAACACATCCGTGAAAATAACATCACTCAGGGTCGCATCATAGAGATCACTAAGATGTCCTTCGAAAAGGGTACAAGCAGTATAGTGCCAACTACAGCACGCGCCCTGTCTCTGCTCGGCCACGTGCCTCGCACAAAGATCACATGTGAAACACCCACACCTGTTAATATCGATATGTTTCAACCGGCACGTCGAGGTCGGGGTATTGCCAAGAACCCAAGAAGACCTAAGATCCTACAAGGAGGTCATGGCGACTCGGAATTAGTCAATGAGTACTCCGTGCCCGTAACATGCGGTACCAGTGGAGAGAGTCTAATATTCCAGGCGCTCCCAGAACTGAACGTGGAACTTTTAAATGAAGGCGCGCTGCACAGCAGCCAGATGGTTCAGATACAACTCGATGATAACATCTGGAATAAGACGCAGTGA
Protein Sequence: MDWNSWSVAYHRKKMHGKTGPEDGGGTTKIARNDYRCTTHKTTHGFYKRSLADCKKAAKCPGSSEAGPAATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWSVAYHRKKMHGKTGPEDGGGTTKIARDDYRIPCRDCSMVLPNKTALYAHRQKEHSDTTMSDEQGTDAQVRTHAPLATSCSKCGHNFNEPSALQRHLKEVHGHEGEMRGERGRSHACAVCGRTFRSASVRNEHLRVHTGERPYPCDVCGVAFRRIPCRDCSMVLPNKTALYAHRQKEHSDTTMSDEQGTDAQVRTHAPLATSCSKCGHNFNEPSALQRHLKEVHGHEGEMRGERGRSHACAVCGRTFRSASVRNEHLRVHTGERPYPCDVCGVAFRRSTAMRNHRLIHSGVRAWACARCPKRFRIRSDLRTHMRLKHPTYMIVFEMKGLNPTYEEIMQHIRENNITQGRIIEITKMSFEKMKGLNPTYEEIMQHIRENNITQGRIIEITKMSFEKGTSSIVPTTARALSLLGHVPRTKITCETPTPVNIDMFQPARRGRGIAKNPRRPKILQGGHGDSELVNEYSVPVTCGTSGESLIFQALPELNVELLNEGALHSSQMVQIQLDDNIWNKTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -