Ppol015349.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- -
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000022.1:189952-196873[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.1e-05 0.0054 17.6 1.0 1 21 113 133 113 134 0.95 2 12 0.059 5.3 8.2 0.0 1 23 142 165 142 165 0.96 3 12 0.083 7.3 7.7 0.9 1 23 169 191 169 191 0.93 4 12 0.0027 0.24 12.4 1.5 1 23 196 219 196 219 0.96 5 12 0.00021 0.019 15.9 0.5 2 23 224 246 223 246 0.96 6 12 0.18 16 6.7 0.2 3 20 260 277 258 279 0.93 7 12 0.082 7.2 7.8 0.0 3 23 292 312 292 312 0.98 8 12 0.00045 0.04 14.9 0.2 2 23 318 340 317 340 0.95 9 12 0.0013 0.12 13.4 0.8 2 23 360 381 360 381 0.97 10 12 2.2e-06 0.0002 22.1 0.7 1 23 387 409 387 409 0.99 11 12 1.6e-06 0.00014 22.6 2.7 1 23 415 437 415 437 0.94 12 12 4.6e-07 4.1e-05 24.3 1.4 1 23 443 466 443 466 0.97
Sequence Information
- Coding Sequence
- ATGGCAGACATATTAGTATGCCGTATATGTTTGTCAAAAGACAAGAAGTTGTATAATTTATTTAAGAACAAATTGGCGGAGCCATTTGAAATTCTTACTGGAATACAAATCACAGAATGTGATGGTTTGCCACATAAGATATGCAGCTTTTGCAGTACTCTTCTGCAGAAATGTGTGACTTTTAAAGAAAAATGCTTGAGCAGTCATGAATTTCTGAAATACTCTGTGCTAGAACATGGAATGGTATCTGATGTAGAAATTGTTGTATTAAGTAAACAAGAACAGATAGATGAAGTGGAAGCGAGGAAGACGTCTGTGAATTATTTAAACTCCTTTTATAAATGTGATAAATGTTACAAAGGTTTTATAACTGAATCAACATTTAGGAATCATATGGCCAAATATGATCCGAAAAATGGTGAATACGTGTGCGAGGTGTGCCGGGCGCGGCGGCCGAGCGCGCGGCTGCTGCGCGCACACGTGCTCTCCTCACACGCGCGCAAATACATCTGCAAGATATGCGGACATGTCTCGCGAGAAAGTTACAAAGCAAAGGAACACTCAAATTGGCATAAAGGATTTTCATTTATATGCAAAATATGCGGGGCTTCTTTTGTTAAATCAACAAGCCATTTAACACACATGAGGTTACAACATCCGTCAAATAGTTCGTGTGATATTTGCGGGGAGTCATTCATTGGGGAACATGGACTTAAAATGCATAAACGACGCGCTCATAGAGACGAACAGGATCAAGAAACAAAAGTGTTATCACATTGTGAAACATGTTCCGCTGAGTTCTTCAATTTAGATGCGATGAAGAGACATTTGGATGTTTCAAAGAATGGTATATGTGATACTAATCTAAGATGGTGTCCATATTGTGGTTTGGGTTTGGAATCAATGGAAACCTACAATGAACATGTCAAAGTACATCAAAAAGAAATCGTACCCTGTCAAGATTGCCCGCGCACTTTCACAACAGCGCGCTCTCAGGCGACCCACTACCAGCGCGTTCACCTCGGCCTCAAACTGCGCCAGAACAAGCCCACCCTCAAACACGCCGCGGAGAGTGCGGTCTGTGAGGTCTGCGGCAAGAAGTGTGTCTCCAAAGCTATCTTGACATATCATCAGAGGATCCATACTGGAGAGAAACCCTACCAATGTTCTCAATGTCCGAAGAAGTTTGGTTTACAGCAGCAGTTGACGATCCACATGCGTATCCACACAGGGGAGTGTCCATACAAATGTCCTCATTGTCCTAAAGCGTTCAAACATAAAGCGGCTCTCAACAGGCACGACCGGGTGCACACAGGAGTGAAGCCGTACATTTGTCCTCATTGCGGGAAAACTTTCACGCAATCAAATTCTATGAAACTTCACGTGAATACGGTGCATTTGAAAATGCCCGACCCTTACAGGAATAGGCGGAAGAAAAACTTGTAA
- Protein Sequence
- MADILVCRICLSKDKKLYNLFKNKLAEPFEILTGIQITECDGLPHKICSFCSTLLQKCVTFKEKCLSSHEFLKYSVLEHGMVSDVEIVVLSKQEQIDEVEARKTSVNYLNSFYKCDKCYKGFITESTFRNHMAKYDPKNGEYVCEVCRARRPSARLLRAHVLSSHARKYICKICGHVSRESYKAKEHSNWHKGFSFICKICGASFVKSTSHLTHMRLQHPSNSSCDICGESFIGEHGLKMHKRRAHRDEQDQETKVLSHCETCSAEFFNLDAMKRHLDVSKNGICDTNLRWCPYCGLGLESMETYNEHVKVHQKEIVPCQDCPRTFTTARSQATHYQRVHLGLKLRQNKPTLKHAAESAVCEVCGKKCVSKAILTYHQRIHTGEKPYQCSQCPKKFGLQQQLTIHMRIHTGECPYKCPHCPKAFKHKAALNRHDRVHTGVKPYICPHCGKTFTQSNSMKLHVNTVHLKMPDPYRNRRKKNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141096;
- 90% Identity
- iTF_01144724;
- 80% Identity
- -