Basic Information

Insect: Papilio polyxenes
Gene Symbol: -
Assembly: GCA_026167825.1
Location: JAOPJD010000007.1:3146759-3157292[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.3 27 6.0 2.6 6 20 12 26 7 28 0.87

2 12 0.24 21 6.3 0.1 2 20 34 52 33 54 0.93

3 12 0.08 7.1 7.8 0.4 1 16 194 206 194 214 0.73

4 12 0.00023 0.02 15.8 0.0 1 23 282 304 282 304 0.98

5 12 8.1e-06 0.00072 20.4 1.2 1 23 320 342 320 342 0.98

6 12 6.7e-05 0.0059 17.5 0.6 3 23 397 417 395 417 0.97

7 12 0.00036 0.031 15.2 2.9 1 23 433 455 433 455 0.99

8 12 7.3e-07 6.5e-05 23.6 4.7 1 23 461 483 461 483 0.98

9 12 0.00017 0.015 16.2 4.3 1 23 489 511 489 511 0.98

10 12 4.7e-06 0.00042 21.1 0.2 1 23 517 539 517 539 0.98

11 12 0.0015 0.13 13.2 0.2 1 23 543 565 543 565 0.97

12 12 0.00014 0.012 16.5 0.1 1 23 573 596 573 596 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.3	27	6.0	2.6	6	20	12	26	7	28	0.87
2	12	0.24	21	6.3	0.1	2	20	34	52	33	54	0.93
3	12	0.08	7.1	7.8	0.4	1	16	194	206	194	214	0.73
4	12	0.00023	0.02	15.8	0.0	1	23	282	304	282	304	0.98
5	12	8.1e-06	0.00072	20.4	1.2	1	23	320	342	320	342	0.98
6	12	6.7e-05	0.0059	17.5	0.6	3	23	397	417	395	417	0.97
7	12	0.00036	0.031	15.2	2.9	1	23	433	455	433	455	0.99
8	12	7.3e-07	6.5e-05	23.6	4.7	1	23	461	483	461	483	0.98
9	12	0.00017	0.015	16.2	4.3	1	23	489	511	489	511	0.98
10	12	4.7e-06	0.00042	21.1	0.2	1	23	517	539	517	539	0.98
11	12	0.0015	0.13	13.2	0.2	1	23	543	565	543	565	0.97
12	12	0.00014	0.012	16.5	0.1	1	23	573	596	573	596	0.96

Sequence Information

Coding Sequence: ATGGGAGACGTATTAATACATTGTCCTTTGTGTTGCAATCAAACCTTTAATTCAAAGCATGATTTAATTGAACACTTAACAAACATTTTATCAAATTTAACTTGTCCAATTTGCCAAGATAAATTGGAGACCTTAGATCACCTCAAAGAGCATTTGATTCAAGACGAATGTCAAGAAGTAAACTTACAAGACAATACTTGTGATAAAGATGTTATATGTTATAAGCATGAAGACAATGCAGAAATAGATAGCCAAGATAATATAGAAGAGATAGATACAGCAAATTCACTATCCCACAATAGAGAAGTTGAAACAAATGAGAATTCAGTTTATGTAGAGTTGTTGGATGAAATAAAGCAAACTCCGCAAGGACAAGAACTAAGGCTCATTAAAGACAGTAGTGATAGATACATGATAGTGACGGATGATGTGTCACTATTGAACACTGGCAGTACTGTTGTAAAACAAAATAATGATGGTACAATATCAATGACTGTTGAAGAACCAAAAGTAGAGGAGATTGATGATAATCAAACAGAAGTTGTTGACACTGGGTCTGATCAAAATAATGATGGATTATATTCATGTAACACATGTGGGGTTTCATTTTCTTCAGTTCTAGAACATATACAAACTTATCATAATGATCAGGAAGTGGTTGTAGAGGAGCAATTGGATAGCAATATGGCACTAGAGTATGAAAATGCAGATGAGAATAACATTAGACAGATTGACAATGACAAGCAGACATCACGACGGATGATTACAGATGCTGGTGTTATTATTGAAACACCCTCTGAGGCTCCGGCGACTAGTGAGGTCCACAAAAAAAAGATTGTGCGATATCCTTGTCTGCTCTGTCCAGTTGCTTATGATAACCAAAAATCACTCAGTGCACATATGAAAGTGCATAAAACAAAGCCAGATGAAGTAAATATAGTAGATGTTCCAACAACGTTTGTATGCAATATTTGTTCTACAGTATTCCCGACAAGGAAGTCATTAAAGTTACACAAGCGAATGCATGATCCAGTTAAGTCCCGTCCAATAGAACCCCCGGTACAGACGCTCGAAGGCAATACGGGGAGTGAACAGAAGTATGTTTGTTCGGTTTGCTTCAAACTGATACCTGAAGATTATCGAGAGATACACGAGAACTCGCACGTGAACCCCACCAACAAAGTTAACTGCGACATTTGTAATAAGAAGTTTCAATCAATGCAGGATCTAAAGATGCATATGAATGTACATAATATAGATAAGGTTTTTTCTGGTAAAGAAGACACATCATTACCTTACAAGTGTTTATATTGTAATAGAAAGTTTGCTAGACCACATGAGAAAGTTAAACACGAAAGAATTCATACAGGTGAGAAGCCGCATACTTGTGAGATCTGCGGCAAGTCGTTCCGCGTTTCGTACTGTCTCACGCTACACATGCGCACGCACACGGGCGCGCGTCCCTACACCTGCCCACAGTGCGGGAAGAGGTTCAAAGCTCACAGTGTGTACAACCATCACCTCCTAACACATTCAGATGTGCGGGCGTACAAATGTCCGCTTTGCCCCAAGGCCTTCAAGACGTCCGTACAACTCGCTGGTCACAAGAACTCACACACGAAACCTTTCTCATGTACGCAGTGTAATCGACCATTCGCATCCCTGTACGCTGTAAGATTGCATACGGAGGTGCATTTACGAGAGAATATTCTCAAGTTCTCGTGTTCTCTGTGTGGTGCGAGCTACGCGAGGGCTTTCGCGCTAAAAGACCACATCAAGCAAGCGCATAAAGACGCAGTTGATAATAATCTGATCAATGTGAAGAACGATTGGACGATTCGAGTACAAGACGGCGAAGCAGATGACGACTTGGTTGTTATTGGTCTTGACAAACAATTGTCTCCAGAGATTGAAACTGATTCGAATGCGCCCGAGATGATAATTCCTTAA
Protein Sequence: MGDVLIHCPLCCNQTFNSKHDLIEHLTNILSNLTCPICQDKLETLDHLKEHLIQDECQEVNLQDNTCDKDVICYKHEDNAEIDSQDNIEEIDTANSLSHNREVETNENSVYVELLDEIKQTPQGQELRLIKDSSDRYMIVTDDVSLLNTGSTVVKQNNDGTISMTVEEPKVEEIDDNQTEVVDTGSDQNNDGLYSCNTCGVSFSSVLEHIQTYHNDQEVVVEEQLDSNMALEYENADENNIRQIDNDKQTSRRMITDAGVIIETPSEAPATSEVHKKKIVRYPCLLCPVAYDNQKSLSAHMKVHKTKPDEVNIVDVPTTFVCNICSTVFPTRKSLKLHKRMHDPVKSRPIEPPVQTLEGNTGSEQKYVCSVCFKLIPEDYREIHENSHVNPTNKVNCDICNKKFQSMQDLKMHMNVHNIDKVFSGKEDTSLPYKCLYCNRKFARPHEKVKHERIHTGEKPHTCEICGKSFRVSYCLTLHMRTHTGARPYTCPQCGKRFKAHSVYNHHLLTHSDVRAYKCPLCPKAFKTSVQLAGHKNSHTKPFSCTQCNRPFASLYAVRLHTEVHLRENILKFSCSLCGASYARAFALKDHIKQAHKDAVDNNLINVKNDWTIRVQDGEADDDLVVIGLDKQLSPEIETDSNAPEMIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149781;
90% Identity: iTF_01144723; iTF_01139122; iTF_01149781;
80% Identity: -