Ppol004269.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio polyxenes
Gene Symbol
-
Assembly
GCA_026167825.1
Location
JAOPJD010000021.1:2368944-2396141[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.74 65 4.8 0.0 2 23 166 188 165 188 0.93
2 41 0.1 8.8 7.5 0.8 2 23 259 280 258 280 0.96
3 41 0.00061 0.054 14.5 0.1 1 23 284 307 284 307 0.97
4 41 6.2 5.4e+02 1.9 0.3 2 22 314 334 314 334 0.93
5 41 0.019 1.7 9.8 2.3 1 23 341 364 341 364 0.93
6 41 0.13 12 7.1 3.6 1 23 371 394 371 394 0.97
7 41 0.0013 0.11 13.4 0.2 2 23 409 431 408 431 0.96
8 41 0.77 68 4.7 0.1 2 23 456 478 455 478 0.93
9 41 0.00019 0.017 16.1 1.8 1 23 526 549 526 549 0.95
10 41 0.1 9.2 7.4 0.5 3 20 556 573 555 574 0.92
11 41 0.016 1.4 10.0 0.3 3 23 584 605 582 605 0.91
12 41 0.31 28 5.9 2.0 1 23 612 635 612 635 0.94
13 41 0.0058 0.51 11.4 1.2 1 23 640 662 640 662 0.95
14 41 4.5 3.9e+02 2.3 0.2 3 20 722 739 720 743 0.78
15 41 0.82 72 4.6 0.8 1 23 766 789 766 789 0.96
16 41 0.0022 0.19 12.7 0.6 3 23 814 834 812 834 0.96
17 41 0.16 14 6.9 0.2 2 21 839 858 838 859 0.92
18 41 1.7 1.5e+02 3.6 0.2 1 23 900 923 900 923 0.93
19 41 0.4 35 5.6 0.1 2 23 949 971 948 971 0.95
20 41 0.0086 0.76 10.8 1.0 2 23 995 1016 994 1016 0.95
21 41 0.00032 0.028 15.3 0.0 1 23 1020 1043 1020 1043 0.97
22 41 0.31 27 6.0 0.8 1 23 1047 1070 1047 1070 0.98
23 41 0.19 16 6.6 5.7 1 22 1109 1130 1109 1132 0.88
24 41 0.012 1.1 10.4 0.1 1 23 1217 1240 1217 1240 0.91
25 41 2.6 2.3e+02 3.0 1.6 1 23 1311 1333 1311 1333 0.96
26 41 0.00026 0.023 15.6 0.5 1 23 1337 1359 1337 1359 0.97
27 41 0.026 2.3 9.3 0.2 1 23 1402 1424 1402 1424 0.96
28 41 0.62 55 5.0 0.1 2 23 1448 1470 1447 1470 0.93
29 41 0.016 1.4 10.0 2.1 1 23 1492 1514 1492 1514 0.98
30 41 0.0016 0.15 13.1 1.3 1 23 1518 1540 1518 1540 0.96
31 41 0.0021 0.19 12.8 2.0 2 23 1548 1570 1547 1570 0.96
32 41 0.0029 0.26 12.3 0.5 2 23 1683 1704 1682 1704 0.97
33 41 0.033 2.9 9.0 1.0 1 23 1823 1846 1823 1846 0.95
34 41 3.9 3.4e+02 2.5 0.6 3 23 1872 1893 1872 1894 0.94
35 41 0.062 5.5 8.1 0.3 1 23 1917 1939 1917 1939 0.98
36 41 0.00079 0.07 14.1 0.2 1 23 1943 1965 1943 1965 0.98
37 41 0.00019 0.017 16.1 2.3 1 23 1970 1993 1970 1993 0.96
38 41 0.023 2 9.5 0.8 2 23 2000 2022 2000 2022 0.93
39 41 0.45 40 5.4 7.2 1 23 2029 2052 2029 2052 0.96
40 41 0.00051 0.045 14.7 5.4 1 23 2058 2080 2058 2080 0.97
41 41 2.5e-05 0.0022 18.8 0.5 1 23 2086 2108 2086 2108 0.99

Sequence Information

Coding Sequence
ATGGAAGCAAAAACATCAGAATGGCGACCGGGCCCTACCATTGCTTACTCACAATCGGGTGGACCTAATAGCAACAGTCGTTTGATCTGCGAACCTTGTATATCACGGCTGCGTGATGCAGCTGACTTCAAGCGACAGGTGCTAGAGTGTGAGAAGACTTTTCTTCAACACCTGGACCCCAGCACCTCTGGTATTGTTGCTGAAGATGTAGATGATCAGCCATTAACAAAACTCGCTAAGGCACCAAAGAAAGAGACGGTGGACTTATTGGATTTGATTGATAATGCCAAAGTGGCTGAGAAACGCAAGTCGACAACCAAAGTTAAAGCCACACCAGTTAAGAAGGCTAAACTGAAGAAAGAATCGAAAACGACGGCAAATCAAGATAAACCGGAGAAGAAAAAGAAAGAGAAATGCGATCCTGTGAGGAGGAATGCGGAGATTATCATAAGATATACCACAGCGAGTCCCTTTCGTGTCAACGTGAAGACAGTAACGTGCGTGTATTGCGGGGACCTGTACCAGGACCCTGAGCAGTTCAGAGCCCACATGGCTCAAGAGCACAAGGTCTTCTCTCTACACATGGCTTTCGCGAAACTACCAAAATCTGAATATGTTAAAGTAGATATCACGAATATGCAATGCAGATTATGTCAGGGCGAATACAAAACTCTAGAAACGATAGGACTTCATTTAAAGGAGGCGCACACCAAAGACATATCAGTAGATTCACCGCTCGGTGTAATGCCATTCAACCTTGATAAGGATAATTGGAACTGTGCCGTTTGCAGTAAAAACTTACCCTCATTATTGCATCTGAATAAACACACCTTGACCCACTTTCAAAGTTTTGTGTGCGATGTCTGCGGGAAGAGTTATATCGCGTCAACTGGGCTTCTTACTCACGTTAGATCGAAACACGAAAATGAATATAAAGCTTATTGTAAACGTTGTCAAGTGATATTTCCCTCGATGAAGGCTAAGCAAATACACCAAAGAAGCGATAAGCGCTGCATGACTCACTGCTGTCCAGAATGCCCGGAGAGGTTTCCGAGTTACGAGTACAAGCAGAAACATATGACGGAGGCTCATGGATTGATGAGGAACGAATACACTTGTCTGCGATGCCCTTTGACCTTCACACATAGACAGGCTTTCTATGATCATTTTAAGAAAGCTCATTCTGTAGATTCGTACCCGTTCAGGCTTCCGGAAGATGCCATGGTTTGTGTATACTGTGGCGAGAGTTGCGATGATCCCATCGAATATAGAAAGCACATGGATACCGAACATCAGACGTTCCATGTCCGTATGGCTTTCGTACATTGTAACGAAGGTTACATCAAGGTCGATTGCACAGAGCTGAGATGTCGCATCTGTTTGCTAAGTTTCGATACAATAAATGACGTAGCGAAGCATTTGAAAGATGTCCACCAAGAGAACGTTGATACGAATTATGAAATCGGCGTTTATCCGTTCAAACTTGAGAAAGACCGTCTTCTTTGTGCAATATGCCGTTTGAAATCACCTTGCATCCGTCAGCTCAGTAGGCACATACAAACACATTTTTTAAAATATACATGCGAAGCTTGTGGCAAATCGTACGCGACGAGTACAACTTTAAAACATCATATTACGTACTCGCACACTGGTGAAGCTCGTATTTGTAGGAAATGTAAAAAGACATTCAGTAGCTTGGAAGCGAAGCGACAACATTTGGCAGACACACCAAAATGCTGGTCTCACTTGTGTAACGTTTGCGGAGAAAGATTCATATCGTGGACATTGAAACAGGCGCATTTAGCGCAAGTGCACGGAACCCCGAAGAGGTCTCATGTGTGTCTCGAGTGCGGAGAAACGTTTTTAGATAGGAAAAAATATAGGGAACATTTTAAAATATCTCATACTGATGACAATTATGTCTGCTCCTGTTGTGGATTGAAATTTGCTACCAAACGTAACttggaggagcacagagtggtgcacactaaagagaaactcttccattGGCCCAGAAAGGAACTCGATGGATTAAAGAAAGAGAGTAAACCAAAAAGACTGTTTGAAAGGTCCGTCAACCAGAATCCGGTGCGGCAAAACGCCGTGCTGATATTGAAGCATTCCACCGCGTTCCCTTTTAAGACACGTTTTAACAGAATCATTTGCTCCTATTGTCACGAGGAGTTTCAAAACATGGCAATACTCCGCGAACATGTTACGGCCGATCATTTAAATGCAGACTTCAATAGTGCTTTTTACAAAGTTGTAGACGATCTTAAAATAGATATAACTCAATTCAAATGTAATCTTTGCTCGACTGACATGACGAATGTTGATACGTTCATGACACATATATCCAGAGATCACGATATATCGGTTAATTTTGATGTACCATTTGGCGTACTTCCTTACCGCCAAAGTCCCACCGGACTTTGGATTTGCTTAGATTGTTACAAAAGTTTCTCAGAGTTCTCCCAAATCAATACCCATTTGCGAAGTCACGTCAAAATATTAACTTGCGATAAATGCGGAGCCACATTCCTGTCCAAACAAGGATTGCGACAACATGAAAAGAGTTTCAAATGCAACAAGGCTTCGTATAAGCCACGTTTCGGTAAAGCGCTCAAACATCGCAGCAATACTGAAATAATTTTACAGTGTTCAACTGCTTGCCCCTTTCGGACTTGGGGACATAATTTCAACTGCGTATTCTGCAGAGTTCAATCCAATGATCCCGTTGGGTTAAGAACTCACATGGCTAATCGTCATGCGAACTTCGATATTCAACTAGTGTTTAGTAGGAAATTGCGAAAAGACTTTCTCAAAGTCGATATCACCGATCTTCAATGTAAGCTGTGCTTCATGCCAATAGACTCCCTTGATGATTTAATGGCACATCTCAAGAACGATCATAAGCAGCCGTTGAACTTCGACGTACAACCGGGCGTGCTGCCGTTTAAATTGAACGACGGCTCCAATTGGAAATGTGCTATTTGCAAAATGCAATTTTCAAACTTTATATCCCTTAAAAAGCATACATCTGAACATTTTCACAACTACGTGTGTGATACTTGCGGTGAAGGATTTATAACTGAAAACGCTCTGGTTGCCCATACGAGGATACCGCATGATAATAAGTACAAGTGCAGTCGTTGTATAGCCACGTTCACCACATTAGAAGAGAGAAACGTGCATGTCAAAACTCAGCATACGAACTTGCCCTACATGTGCGTGTACTGTAAAGACAAACCCAGATTCGGTACTTGGGAATTACGTAAGAGACACCTCATGGAATTTCATAATTTCAAGCCGAGGACAGAGATGTACGAATGCACGACTTGCCATATGACTTTCAAAACGAGATCTCAGAAATACCATCATAACGTGAAAGCGCATCGAACGAAAATGGAAACTGAGTTTGGATTCCCGTGTTCCGCTATTGCGGACGAGACGGCTAACAAGGTAGTTAAGCAAGTTAGGAAGTTAAAAGAGAACGTAAGCGCGCGACAGATGCGCAGGCGCCGGCGCGCCAACAATCAACTGCCCGAAGAGTCCGACAAGCGAATCGCCAAAACTATGATGAGAAGGAACGCGATGACGATTCTAGAATGTTCTTCCGCTTGGGCCTTTCGATGGTTTCATAATGCTTTCTACTGTTCCTATTGCGATGAGAAATTTGTCGATTCTTTGCCATTGCGAGAACATGTAATAGCCTCCCATTTAACTGATCCTCCAACTCCACGTGTATTTGCAAAATTGACAGAAAATAACATGCTCAAAATAGACGTAACAAGTTTAAACTGTAGGCTTTGTAACTGTGTTTGTTCCTCCATAGACATACTTAAGAATCATCTAACAATTGAACACAAAAAGATATTTAATAAGAATTATAGTGATGGTGTTCTGCCTTTTAAGCTGGATCAGACAGGATTTAACTGTCAAATGTGTTTTGACCTTTTCTCAAGTTTCTCCAAAATAAACGAACACATGAATTCTCATTATCAAAATTATATTTGCGACGCTTGCGGTAAAGCTTTCGTCTCCAAATCCAGGTTCAGAACCCACGTGCAGTCACACGAAATTGGAGCCAAGGATAGCAATGTTAAGTGGAAAACGGGACGCAAGTTAAATGATGTCAGAGATAACGCTGCTATTATTATAGAGTGTTCCAACGTGTGCCCGTTTAGGTGGAGATGGGGACAATTTATTTGTGCTTACTGTCCTACATCATTTGGAGATTTTAAAGGATTCAGAGAACACGTAGCCAAACATTCAAAAACGGAAGAAGCGCCGAAATTGTCGCGTCCCGTCAACACTACAAAAGCTGAGGTCTCTGACCTTCAGTGTGATTTATGTTCACAGAAAGCTAAAGATTTAGACGAACTTGTCGAGCATTTGACTAATGCTCATAATAAGCCCATAGTTAAAGAGTACGGCATAGGTATCACACCGTTTTACCTCAACGGTGATGAGTACATTTGCACTCAATGCGGTGTACATTTCGATCTGTTCACTAAACTGAATTCTCATATGAATAATCATTCTACAGATCATATATGTTATAAATGCGGCAAGACCTTTTCTGGCGCGATTCGACTCAAGTCGCACCTGGTGACACACGAGTTGACAGGGGAAGGATGCAAGTGCACGAAATGCGGCGAAACTTTCGCGAACCTCAAGCTGAGGGCGACTCATATGTCGACCGTACACAAGCCTAAGTTGAGATATAGAAAATCTGAAGACATACAAATTAAGAATGAAGTGGAATCTGACATGGAAAATATAGGAGCTGCTCTCGTTGTGACAGGGCGGGACGCGGGCAACGAGCGGCGTGCCGCGTTCCGAAATAACATTAAAATTATCATAGAGTCGTGCACTGCTTGCCCGTTCAAGTACAGGAAGGGCACTTACCTGTGCTTCTTCTGCAAAACCTCCTTCTTGGAACCGGAGCGTCTGCGCGAGCACACCCGCCACCAGCACTCTGATATTAAACAACTGCTCAAACCCCGCAAATACGAACCCTTGAAAATGGACTTCGCTCTCACTACATGCAAATTATGCGGTCTTTCCATTTCTAATTACGAAATGCTCAAGTCTCATTTACGGGAACACGGAAAACATCTAGACTGCTCCTACGGATCGGACAGTACGGATATACAAGCCACAAAAAGGATCGTGCCGTTGTTCCAAGTGGATTACGACCGTAGCCTCTGTAGGCCACTGGGCACCGTTACAAATTTTAAGAAGGTGCTTGCTATGGCGCAGCTGAGCGGCGAGGACCTCTCGTCCCGGAGCCCTTCGCCTATATACATGGACAGAGCACCCTCGCCTCAAATTGTGCACGACAGAATAGATATTCCACAGCTACAAGAACAAATACCTCAAAAAAATGTCGATATTCGACAAAACGCACTAACTCTATTCGAATTTTCTACCGTATATCCGTTCGTCTATGGGAATAATAAATTTAAATGTTTCATTTGCTCGCAACCGTTTCTAGAAACTTCCCTACTGAAACGCCATATGCAGGACACGCACACATACGCCCCGATAAAACGTCTGGTCAACAATCGTAGGGAGAACGTCATCAAAGTGGACGTTAGCGAAATGGGTTGCAAACTGTGTCCCCTCAAACCTAAGGACTTGCAGGAACTCAAAGTACATTTGAAAGTTGAACATCACAAATTAATTGAACCCGATTTGAAAGATAATATCATTCCATTCGTGCTGGAAGGTGACGAAGAGGGATACAAATGTGTTATGTGCGAATCGAAATTCATTAAAGTTCGAACTCTTGTCATTCATATGAGTGTACATTTTAATAACTACAGCTGTGAAATCTGCGGATCAGGATTCATGACGTTGCGTTTGCTGAAGAAACATTTGGAGGTGCACGAGAGTGGAAACTTCCACTGTGACCGTTGCAACAAAGTATTTAACACGTCGTACAAATTGTCGCTGCACATTAGAGGGGTGCATTTGAAGCAGTACCCTCGACGATGTCCAATGTGCCCGGAGAGATTTAACTCGAACTATCGGCGGACGAAACATTTGCAAGACGTCCACAATCAATCGACGCGCGTGCACAAATGCAAGACATGTGGTCGTGGCTTCAACCTTAGATATCACTTAGTGTGCCATACGAGATCTGTGCACCTTCAGGAGAGGAACCATCAGTGTAAGATCTGTCTGCAGAGGTTCTGTAATAAAGAGACGTTGAAACGTCACATGGTGATACATACGGGAGAAAAGAATTATAAATGTGAAATGTGTGGTGAAGCGTTTTTGCGCAGGAAAAATTTAAGGGATCATTTACGTGTACACGAAGTGCTTTGA
Protein Sequence
MEAKTSEWRPGPTIAYSQSGGPNSNSRLICEPCISRLRDAADFKRQVLECEKTFLQHLDPSTSGIVAEDVDDQPLTKLAKAPKKETVDLLDLIDNAKVAEKRKSTTKVKATPVKKAKLKKESKTTANQDKPEKKKKEKCDPVRRNAEIIIRYTTASPFRVNVKTVTCVYCGDLYQDPEQFRAHMAQEHKVFSLHMAFAKLPKSEYVKVDITNMQCRLCQGEYKTLETIGLHLKEAHTKDISVDSPLGVMPFNLDKDNWNCAVCSKNLPSLLHLNKHTLTHFQSFVCDVCGKSYIASTGLLTHVRSKHENEYKAYCKRCQVIFPSMKAKQIHQRSDKRCMTHCCPECPERFPSYEYKQKHMTEAHGLMRNEYTCLRCPLTFTHRQAFYDHFKKAHSVDSYPFRLPEDAMVCVYCGESCDDPIEYRKHMDTEHQTFHVRMAFVHCNEGYIKVDCTELRCRICLLSFDTINDVAKHLKDVHQENVDTNYEIGVYPFKLEKDRLLCAICRLKSPCIRQLSRHIQTHFLKYTCEACGKSYATSTTLKHHITYSHTGEARICRKCKKTFSSLEAKRQHLADTPKCWSHLCNVCGERFISWTLKQAHLAQVHGTPKRSHVCLECGETFLDRKKYREHFKISHTDDNYVCSCCGLKFATKRNLEEHRVVHTKEKLFHWPRKELDGLKKESKPKRLFERSVNQNPVRQNAVLILKHSTAFPFKTRFNRIICSYCHEEFQNMAILREHVTADHLNADFNSAFYKVVDDLKIDITQFKCNLCSTDMTNVDTFMTHISRDHDISVNFDVPFGVLPYRQSPTGLWICLDCYKSFSEFSQINTHLRSHVKILTCDKCGATFLSKQGLRQHEKSFKCNKASYKPRFGKALKHRSNTEIILQCSTACPFRTWGHNFNCVFCRVQSNDPVGLRTHMANRHANFDIQLVFSRKLRKDFLKVDITDLQCKLCFMPIDSLDDLMAHLKNDHKQPLNFDVQPGVLPFKLNDGSNWKCAICKMQFSNFISLKKHTSEHFHNYVCDTCGEGFITENALVAHTRIPHDNKYKCSRCIATFTTLEERNVHVKTQHTNLPYMCVYCKDKPRFGTWELRKRHLMEFHNFKPRTEMYECTTCHMTFKTRSQKYHHNVKAHRTKMETEFGFPCSAIADETANKVVKQVRKLKENVSARQMRRRRRANNQLPEESDKRIAKTMMRRNAMTILECSSAWAFRWFHNAFYCSYCDEKFVDSLPLREHVIASHLTDPPTPRVFAKLTENNMLKIDVTSLNCRLCNCVCSSIDILKNHLTIEHKKIFNKNYSDGVLPFKLDQTGFNCQMCFDLFSSFSKINEHMNSHYQNYICDACGKAFVSKSRFRTHVQSHEIGAKDSNVKWKTGRKLNDVRDNAAIIIECSNVCPFRWRWGQFICAYCPTSFGDFKGFREHVAKHSKTEEAPKLSRPVNTTKAEVSDLQCDLCSQKAKDLDELVEHLTNAHNKPIVKEYGIGITPFYLNGDEYICTQCGVHFDLFTKLNSHMNNHSTDHICYKCGKTFSGAIRLKSHLVTHELTGEGCKCTKCGETFANLKLRATHMSTVHKPKLRYRKSEDIQIKNEVESDMENIGAALVVTGRDAGNERRAAFRNNIKIIIESCTACPFKYRKGTYLCFFCKTSFLEPERLREHTRHQHSDIKQLLKPRKYEPLKMDFALTTCKLCGLSISNYEMLKSHLREHGKHLDCSYGSDSTDIQATKRIVPLFQVDYDRSLCRPLGTVTNFKKVLAMAQLSGEDLSSRSPSPIYMDRAPSPQIVHDRIDIPQLQEQIPQKNVDIRQNALTLFEFSTVYPFVYGNNKFKCFICSQPFLETSLLKRHMQDTHTYAPIKRLVNNRRENVIKVDVSEMGCKLCPLKPKDLQELKVHLKVEHHKLIEPDLKDNIIPFVLEGDEEGYKCVMCESKFIKVRTLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFHCDRCNKVFNTSYKLSLHIRGVHLKQYPRRCPMCPERFNSNYRRTKHLQDVHNQSTRVHKCKTCGRGFNLRYHLVCHTRSVHLQERNHQCKICLQRFCNKETLKRHMVIHTGEKNYKCEMCGEAFLRRKNLRDHLRVHEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-