Ppol006569.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:734481-748351[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 7 6.8 0.6 1 20 339 358 339 360 0.94 2 11 4.3 2.2e+02 2.0 2.2 2 23 366 386 365 386 0.83 3 11 0.029 1.5 8.9 1.5 2 23 768 789 767 789 0.95 4 11 0.0025 0.13 12.3 1.5 2 23 795 816 794 816 0.96 5 11 0.32 17 5.6 0.3 5 23 906 924 903 924 0.91 6 11 0.0019 0.099 12.6 0.3 2 23 941 962 940 962 0.96 7 11 1.3e-05 0.00068 19.4 5.3 1 23 968 990 968 990 0.99 8 11 0.0094 0.48 10.4 0.8 1 23 995 1017 995 1017 0.98 9 11 0.00011 0.0056 16.5 0.7 2 23 1024 1046 1023 1046 0.96 10 11 0.088 4.5 7.4 2.0 2 20 1052 1070 1051 1070 0.94 11 11 0.0017 0.09 12.7 0.5 3 23 1083 1104 1082 1104 0.97
Sequence Information
- Coding Sequence
- ATGGAAGACACTCCGCTGAtagattttaacataaatgttaaagtagaAAAGATAGAAGATGAAATAGATACAGAAGAAACATatgagattaaaataaatgaatctcTAGACAATGTTGCAaagaaacaatacaaaaaagcACTAACTCAAATGATCAGTAATGATTCTGACGATGAGAATGCATCAAGTGAGAATTCCAACTCAACTTCGGAACCCAAATGTAGCCAAGTATCTAGCTTTGATAATACAAGGAGTAATGAATCAGGTTACGAAAAATTCTATATTATACGAAATCGTAAAATTCATactttaacaaaagaaaatatactaaaagGTATCGAAGAACAAACGTATCTATTGAAAAGTAAAACAGatgtacttttaaacaaattgattCGATCTCACCATCCTCAAAACTATATACATCCAAGAACTGTACATACAAGTCTGTTAGACAATGTCATACAGTTATGGAGAAATTGGCATGAAAACAATCCAAGACAAAGAAATAcaccatttttatataaatgttatatatgTCTAAATGGATGGTGTAATTTAGAACCTTTTAGACAGCATATAAAATCACATAAACACCCAAATTTAATTCTCTCCCTCGAAGAAAtgggtaataaaataaatattgttgcCAGTATTggtaatgcaataaaaaaaaacttaatcacAATAAATACTAATTGTTGGAATTGTTATAAACCTATTGTTATAAAAGGTGTATTCAAAgtttttccaaaaaaaaatacttgtgaTTCTTGTTTGCTATCCGATGTTGGGTTGTATGAAATTGCTAGTGAGagcttaaataaatttactggGGTTATATGTTCTATTTGCTCTGtgtattgtaaaaatgaaGACATATATAGTCATATGGTTTTAAATCATACACCAAAATCTGATGAGCCAGCGGTAACATATCCTAAGATATGTAAATTGTGCGAAgagctatattttattaagaattacCATGATTGTCCTaaacgtaataaattatataaatgctatgtttgttttaataaatatataacaaagcAATTGCTGCAGTTACATAGGgcaatgaataaaaatgtcacaTCATGTCCGGATTGCTCGAAGAAAATCAAACAATGCTATTTTATTGAACATTTATTGAATCATTCAGCAAATTATGATATGGTACAATATTgctgtaaatgtaaaaataatttactatatcCAAATTGTTTGTGGTTTAACAAACATATGTTGAACCACGGCGATATGGTACAAAGGCGACGGTATAAAGTcaagATGCTGTTGCCATTAAATTGTGTAAGATGCGTTACAGTGGAAAGTACAATGCGTCTAGAAGTaaattaCAAAGAAGTGCATAAATATCTATGTGATTTCAAATATATGAATAACACACCTCCTAAACTGAtcgaaattattaaagaacaTAACAAAACGAAAAAAGATGACGTGCAATTATCAGGCACTGTTAACATAGAACAGAATAGAGTAAACCAGAAATTACCAGAATCTGATTTTGGAAGAAATGTTGATACTGATATCGGATCTGATTCAGAATCTGAAAACGCATTTCAAGATCAATTAGATGCTGAAATACAAAGAGATGTTGAAATAGAGAAGGAAATATCTAAAGTATTTCAAGCTTCTagtatttataagaaatttcTAGATAAAGAAGTTAATGATCCGATAGAAGATAACGATGTTTGTATTATTGATGCAAAGGAAGAAGTATTTGTGATATCAGATACCGATAGTGAGACATCGAAATTAGTAATAGATACCGATAgagaagaaaatattaaacaagaaataacGGAATCTGATGTAGATATTGAGAATACGAGTAATCATTCTGTTATAGAAGaaaatcttaataatgttaaaatagaaTCCGATATTGAGAGAAAagatgatttaattttaaatcgatatATAGATTTTGAACAAAAAGATGTTGTGAAAGATATGAACACTGAAGAGAATTTAGAATTCGAAATTAAAGAGGAAACAGATATAAAAGAAGAAATTGAAtatgatgaaaatataataaataatatagattttgcGAATATGAAATCTGAACATACTTATGAAGTTGATTTGAATACAGGGTGTTCTAAAGATTGGTCTATTAAAACACCCGGTTGTAAAAATAGGAAACAAGAAAaaccattaaataattacgaattatggattaataaagataaaaaattcaaatgcacacaATGTTCATATACAGGATGTTACAGAGAATACATAGATCACATAATGAATTGTTTTCATACGAAATGTACATATTGtatgaaaagttttaatgacGTCAAACTATATTTACGTCATTTGTCAGaccataaattgaaatatctctCTTGTCCTCAGTGTTTTAAGAAGTTCTATTTGATACAAAATCTTAAACATCACATAATAATACATATACATGAATTGTATATAATTGTACCGAGTGACGTCGGACGTAAACAAGATTTTAGCACTTATATATGCAATGTTTGTGATggaattgttaaaattgaacAATTCTTCATACATTGGGAAGGACATTTGGAACTAAATGAAGCGGTAGAAGATGAGATGTCGGACAAAGAGgctgaattaaaaagtatgatGACCCCAGAAATGGTGGATCGAGTTATTGaaaTCCTAACAAACCCAACGTTAAATAAGAAGCACAAAGTGTGTATTGTTTGTTCAAAGATATTTGTCAGAAGACTTGATAATAAAAGGCATTTGATCGaacatttattacatgaaGCTAAAATAGAGATGGCTGCAACCGGAGCCAGGCTCCGTTGTCCCATCTGTGACCAGCATTTCCAGGATCTTCCCGGATGGAGACAGCATTTGAGAGAACACTCTCATATCAAGACTTATCGGTGTTCTTTGTGCCCTAAAAAGTTTTGTGATTCaagtaattttagtaaacatAGGAAAGTGCATAATCAACATAAATATATCTGTGATCTGTGCGGTGGAAAGTTTTGTGCTAAAACGGGAATAATACGACATTTAAAGACTCACGAGCCGATGAACCCATTACCTTGTTCACAATGTGATAGAATATTTGAttcagataataaattaagaaaacatatgcgtataaaacataataaatatccTCTATCATGTCCTGTATGtagaagaaaatttaaaacgtgCAAACAGAGATGGGACCACATGTGGGACAAGCATAAGTTGAGGAAATCTGTAGCTGATTGTCCGATCTGTAAGAAACAGTATAGACGAACGATAGatgttaaaaatcatttaaaatcagCACATGGatcaaaataa
- Protein Sequence
- MEDTPLIDFNINVKVEKIEDEIDTEETYEIKINESLDNVAKKQYKKALTQMISNDSDDENASSENSNSTSEPKCSQVSSFDNTRSNESGYEKFYIIRNRKIHTLTKENILKGIEEQTYLLKSKTDVLLNKLIRSHHPQNYIHPRTVHTSLLDNVIQLWRNWHENNPRQRNTPFLYKCYICLNGWCNLEPFRQHIKSHKHPNLILSLEEMGNKINIVASIGNAIKKNLITINTNCWNCYKPIVIKGVFKVFPKKNTCDSCLLSDVGLYEIASESLNKFTGVICSICSVYCKNEDIYSHMVLNHTPKSDEPAVTYPKICKLCEELYFIKNYHDCPKRNKLYKCYVCFNKYITKQLLQLHRAMNKNVTSCPDCSKKIKQCYFIEHLLNHSANYDMVQYCCKCKNNLLYPNCLWFNKHMLNHGDMVQRRRYKVKMLLPLNCVRCVTVESTMRLEVNYKEVHKYLCDFKYMNNTPPKLIEIIKEHNKTKKDDVQLSGTVNIEQNRVNQKLPESDFGRNVDTDIGSDSESENAFQDQLDAEIQRDVEIEKEISKVFQASSIYKKFLDKEVNDPIEDNDVCIIDAKEEVFVISDTDSETSKLVIDTDREENIKQEITESDVDIENTSNHSVIEENLNNVKIESDIERKDDLILNRYIDFEQKDVVKDMNTEENLEFEIKEETDIKEEIEYDENIINNIDFANMKSEHTYEVDLNTGCSKDWSIKTPGCKNRKQEKPLNNYELWINKDKKFKCTQCSYTGCYREYIDHIMNCFHTKCTYCMKSFNDVKLYLRHLSDHKLKYLSCPQCFKKFYLIQNLKHHIIIHIHELYIIVPSDVGRKQDFSTYICNVCDGIVKIEQFFIHWEGHLELNEAVEDEMSDKEAELKSMMTPEMVDRVIEILTNPTLNKKHKVCIVCSKIFVRRLDNKRHLIEHLLHEAKIEMAATGARLRCPICDQHFQDLPGWRQHLREHSHIKTYRCSLCPKKFCDSSNFSKHRKVHNQHKYICDLCGGKFCAKTGIIRHLKTHEPMNPLPCSQCDRIFDSDNKLRKHMRIKHNKYPLSCPVCRRKFKTCKQRWDHMWDKHKLRKSVADCPICKKQYRRTIDVKNHLKSAHGSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -