Ppol001081.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:777703-787240[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.2 10 6.2 0.2 2 21 1418 1437 1417 1438 0.87 2 7 5e-05 0.0026 17.6 2.2 2 23 1534 1555 1533 1555 0.95 3 7 0.0031 0.16 11.9 5.0 1 23 1574 1596 1574 1596 0.97 4 7 0.0033 0.17 11.8 4.2 1 23 1635 1657 1635 1657 0.98 5 7 0.004 0.21 11.6 2.9 1 23 1676 1698 1676 1698 0.96 6 7 0.079 4.1 7.5 0.4 1 20 1722 1741 1722 1743 0.93 7 7 0.087 4.5 7.4 1.1 5 23 2107 2126 2104 2126 0.90
Sequence Information
- Coding Sequence
- ATGGATAGGTTGAACCAGTTGAGGAGCGAAGCGGGAGGTTCTGGAGACTCATCATTAGACACGTCTTCGGCCGCGAGTGAGGCTTATTTGACCGCGAACGAGAACTCCAAGTATTTTTCAGTGTTAGAAGATGAGGCAAACTTTACAATTACTAAGGATGTTAATTCCGATCAAGAAGTGGTCGCAGATAATTCAATGATATCGAGTTTATCGCCGATTCCTAAATCGAGTGATTTGGATAATTACAAGATCGGTAAACAAATAGAGGCGGCGAATATATTATCTGGTGGTATTAACATTTTCGAAGACAATGAAAATTCGTATGATGGCGATGAGTTAGTTATCGACGACAATGCTCCGGAGAGTGAAGAAAAAGTGAATTTGGATGATAAAATGATTGAGGATATTCCATTTGGTAAGGTTGAGGATAATTTGGCGGGAAATTTAGATGATGTGGAGCCAGTAATACCAAGTAAAGACACAGAAGTGGTTCTTCAGATTGATGGTAAAAATGTTGATGCTATTGACATAGGAAATGgcttatatttgtatagaaaagATGGTGAGGAGGAATTAGCGGCTGTTCAGATAGTCAATGAGGATCAGCAACAGTCAAGCTTCAAATTCCTTAAAGTGCGtgaGAACTCAGAAGGCAATCTGGAAGTCTATGAAGAAATTGAAATCGAAGTCCCTAAGGAAGTTCCTGTGAAGGAAGGAAAATCAACAGAGAATTTATCTCATATTCCAATAAAAGAGATCAACAAAGTAATCAGTGAACCAGATAAAGTTGAGGAAAAGAAAATCACTACCCCTCAAAAAGAAACACctacaaatgaaataaatgtagacTTGAGTAAAGAATCTCAGTCAGATTCAAAATCGGAAGTAAATCTAAATGGAAAAATGATGAAGTTCAGTGAATCTCGAAAATCTCCTGTTGTTGGTAGTTTCACACCAATGACGTATCATTCCACACCAAATAAAGAAGGTATCCCATTAACAAAGACTATGGTTGATCAGCAACTACACCCAAGTAGACATTCAGATAATGTGAAAAAAACTATAGAAGTCCACACTGACAGCTCCAAGCAAAAGAATTTAGATGCACCTGTCAAAAATTTGAAAGAAATGGATGAAACAAATGAACCAATAAAACAAGATATGGAGTTAAAGCAAACTTCAGaagaaaataatgataatgaaACACCTCCAGATAAGAGTGTGGTTGATAGTCAAGATACAACTCTTAGTAATAAGGGCAAAGAAGAgaatgtcaataaaatttctttgGAGGAAATCAATTCTGATGAAACCTTTGCACAAAAAGATGAACCAGTGtttgaagaaaaaattatGGATACACCAAAGATTGAAGAAGAAATGGAGCAAATACCCAATGATACTAATAATCCAACAATTGTAAAGAATGATGTAATTATTGGAAACTGTGTCGAGGTTCAAAACATTTCTAAAGATGAAGTCGATTCTACACATGactgtataaaaaaatctgtacaaGAATGTGAAGTTACGGAAGTCGATCAAACTATTGCGAACAAAAAAGttgaagaaattcaaacagAACAAACTCTTGAGAGTAATTTAGAAACCGTAttagaaaaagaaacaaaatgttCCACTATTCCAAGTAGTAGTTCTCCTGAAATATCTTCGAAAGCTGTAAAAGACATTcctattaaaaagttagaaGCTATAAACGACAGTGTGAAGGCAAATGATAAAGcacaattagaaaaaaatgaaacgaACAAAGTAACAGAAAATAAACCCCCTGAAAGTAAAAACATGataacaaatgaaacaaaaacagataaaaatgaacaatCAATTTTCGATCTCCCAAAATCAAGCTCAAAACAACAGGAAATTAAGAACAATAAGAAAGAAGAGCAAgacaatagtaaaattattatcaaaaaatcAGCAAAAGTAGAGACCATTGATCACAAGGCGCTTGAGTCTAATGTCACAGCTCCAAAAACTGTTGAATTGaaggataaaaataaaacatttgatagTCTTAAGAAAGTACAACCTAATATAAAGACGGAATCTAAAAAAGAAATTCCAAAAATAGCCAAGCAAATAAGCACAAAagctgtaaataataataatgcgGCAGTTCCATTTGGAAAGTGGACAGAAGCTAACAGGCAAGAGTTTTTGAATAAGATTAAAGAAACTAAAGTAACAACTAACAGTTCTAATACAAAGCAGTTAAAACAGCCGAATGATTTGAATAGAAGAGATGTTTTGCAGAAAATTGATAGTCAAAGACAACAAACTAATAACGCTATGGCCAAAGTACAAGAGCAACAAAAATTAAGTTCTAATAAAAACGAAACTGCTGTATTTGTTAAGTCAGCAGTCAAACCAGACACTAAACCAACTGTCAAAGACCGTCCAGcgtcaaaaataaaacctatGTCTAGTAAAAAAACTACGAAAGCTGATACTTCTGCAAATCATCAAACTGACTCCGCCAGTTTACCAATTTCTAATACAAATAAGAAAGAGTTATTACAAATAAGGGAAATCAACAATCAAGCTTTAATTGACAAAACTGTTGAGGATATTATAAACAGAGTCCCTCCAGCTAAAACTACAAATAGGGAACgaacacaaaataattcaaacatggAAGGAGTTGAAAAACAGAAGGGTATGACATTATTCGGACCGTCATACCATGCTAACAATAATCAACCTGTTACTCTCGATGAAATTGAGACCAAAATGAACGAATTACATGGCATACCATTTGTGGAAAGACCGGCACATGAATTACCTCAGAAATTTGCCGTTGATAATATATTATCTGTAAAAAATGACAGTTCTAAAAGCAAACCCACCAATGAAACCAATTTGTTATCACAGTCAAAAGCTACTGTGCAACCAACAAATGTTATTGTGCACATTGATTCCGACGATGAAATAATAGAACATGAACCGATAACAGGAGATGTTATTCCGAAAAAGATAGCTTTGGAGGATGCACATAACTTAGAAATGCAGCTAACTCACAAAGCAAGTGATGAATCTAAAAAAGAAGTTATTATAACAGAAAAGGATTTTGACAAATTTTACAGAAGAAATTCTGTGAATTACGAAAATTGTCTTACCGTTACTTTAGATGGCAAAGAGTCACATAATGTTGTACAAACTGTAACGGTAGAGAAAGATATGGCTCCAAAGAAGTTAACAAGGAATGAAGTTCTATTGGCAGAGTCTAAGGCGAAGTCGACACATAAACAGCAAATGTTACAAGCGCGACACAGTAACTATCAAAGTAAAATACCtgtttctaataaacatcaaaCATCTGAGGAAGAATCTTACGGAAAGAACTATCAATCGAAGGTGCAAATTGCGTATCATACAGCATTAACTGCGAAACGTCAAAAAGAAAGCCCAATTACTATAATAGAAGAGAAACCAGTAAAAGTGGTGTTTATGGATTCTAGTGTTGACTTCGTACCGTCTCAACTAAACGTACAGGGTGAAAAGTTATCTCCGATCAAACAATTTACACCTGATTTAGAAACTTTTACTCACAGCACAACGGATTCTTTAGATTCAGATATTTTAGACAACTATGACAATAAAGCACAAGAAGAGACTAAAACTAAGAGTAGACATCAAAGAAAGCAGGTTTTAACCCCAGTAGAGGCGCCAGAAATGGAATTAATTCAATCCGACGATTTACTAATTGAAACATCGCCAAAGAAAAGACGTCGAATTGAAGATAGACTTGAAAAAAGTCCTAAAAACCATGTTCCGAAAAAATCATATCTTCTAGGCCGTACTAATGCTGACGACAAACTTAAAATGCCTGAGGTGGATAAAGTTGCTTTTAACGACATTAACAGTCACACTAATACGTACATTGCTCATCCAAATCCAATAAGTGCTATTGATAACTTAGTTAAGGCTGCTGAGTTATTGGAAAATCAAGCTGAAAACAGCAGCAGTTCCATAAAAACACAAGAATCTGACACGTCACTGCAAACGCCTCCTAAAAGAGGACGAGGACGTCCgagaaaatatcctcttcCAGATACAGACTCGGATAAAAGTAAAGCTCCGAGTCCACAGAAGAAGCCAAGGCTGATAGATGCTAAAATACCCAAGCCAGCGAAAGTACCAAGTCCCGAGCAAACTGATGAAGATACAAGCGATGATGAAATGATCAAAGAAAATTGGACAATgggtaaaataaatgaaaatatcgtGTGTCCTATTTGTAATAAACTCTTCCGATCtgaaaatgtagtttttaaacatgttaaacATTGTACAGGTCCGTCGCCAAATCGTTCTGAATCCGACAAAAGAAGGTTCAGAGAATCTCAAGAATTCGAAACTAGATCACGCGCAAGTAAATCTGATGATATGGATTTGGAAGAAGAGGAAATAATAACTCCTAAGAAGAGGAAATCAAAAGAAAGCGTGACTAAAGCTTCCAATTCAGATGAAGATATAGAAGAAATggttaataaagaaaaacctGCAAAACAACATGAATCAAGAAAATCGACAGCAAAAACcaaaaatgttagtaaacCTAATACTGACATAGTATGCGAAGTTTGTGGAAAGAGCTTCCGACATTTGTCGTACTTAGCTCATCATAAGTTGCAACATAAAAGTGACGATTCTAAGAAAAATGATAGCGAAGCGAACGTCAATAAGTCTGTTTTCAGTTGCGAAACttgtaaaaaagaatttaGAAAGTTACATCATTTGGTGCAACATAGGATTATTCATAATCCTAGTTCCATGCCGACTAGAACACTTCGGAAGAGTTCATCTGAACAAGGcgacaataaaattgttaaagagCAGACCGCTTTAAAACAGACCGAGGATCACAGTGCTGGCTTCCGCTGTGAGCCTTGTGACAAGTCGTTTAGAAAACTTCATCACCTCGTCGAGCACAGAGAAACACACGATGGGATAAATAGACAAAAAGCTATCGAAGTAGAAACTCCAAAGCCACAGCTACATCAATGCGATATGTGCGAGAAAACTTTTAAGAAAATTCAACAATTGAATGAACACAAGGAACAACATTTAGAAACGTGTTCTGAAAAATCTGATAAAAGCGTTAAAAGTTCATTCAGTTCCACTAAAGACATTATACACGAGTGTTCATTATGTTACATGGTGTTTCCTAACGAGctatctttaaataaacatacagaaaaatgtttaagaaaaaagaaacagTCAATTGCAAGAGCCAAGCAAGCggctttaaaaaaagaattagaaGGAGAAACGCTAGATACAGAAAGTCAATCGGAGGAATGTCTTAATGAAAAAGATGATTCATTAATAATCGTGGAAGATAATGATGAAGAGAGTCTGGAGCCAATTAATATCAcgcaaaataaattagaagaCCATAAACACATAGGTGACAGTCTAGCTGGGAATTCTGAGGctgataaaagtaaaaatgttgaaatattatCGAGAGAATGTAAAGACATAGATAATACTACGACTATAAAACAGGAGcctattaaaaaatctattgaaCCTAATGAAAAGATTGTAGAGCCAACCGTAACtgaaattgttattaacaaaGAAGATATCATTCCCCAACACATACCATCTAAGATACAAAATGACGAGAACCTTAAACCAAAGGATAATGATACGTTAGTTCATAAGAAAAAGAATATACATAAAGAAAAAGTTGTCCCTACAATAACTaaacgaaaaaaaagtttcaataCGCCCGTTCCTGCCATCGAGACTGTAAAGCCTTCGATAGAATCAAGTGACGAAGACGACGTACGATATATGCTCAACCCAGATTTCAAAGAGGAAACATCAATGGAAGAAAGAAGTTTTATGAAGATCAAAACTAAGAAGCGTAATTCTCTGCATTTTGAAAGACCTAGTTCGAGGGATTTGTTGAAAAGAAGGATTTCAATGCAACTGCCGCTTAAAACGACTCGCACGAAAAAGTCTATAGAACAAACTCCAGTCGCACCGACATCCTCTGACAAGTCAACTGCCAAAGCTAATGAGAAGCCAACAACTGTCACAGATTCCGACGACAGCGATACTAAATATGCTTTCCCCGAAACTGTTAAAGATACCCCCACTACTAGTGAAGTGAAGAAACCTCAGAAAAGGAAATCTATCGCGACCAAGCGGAAATTATTGAGCGGAGTTGTGAAGAGAAAATCTTTGGGTAAACCTACCAAAGTGAAGCACAAATTGATACCTGAACCAGTTAAACCTATTAGAAAACGCACAACAGAAGTGGAGCACAGATGTGATTGTGGTAAGTTGTTCAGCAGCGCGGCGTTGCTGTCGCGTCACACCACGCTCGACCATACGCCGCCCCGCAGCCGCCGGCGCCGGTCGCCCCCGCCGGAACTCGATGCTACTGTCGCCAAGGTCACAAGAAAAACTACCCCGAAGAAAAACGTCAAAACCACTGTCCAAGCTAAAAAAATAGACGACACTAGAAAGTCTGGCGTCGCGACTAGAAAGTCGACTACAAACATCGATGGCAAACCGTCCCGCGACACGCGCAAGTCTGTGAAGGGCGCGCACAGGGGCGTGCCCGTCCCCGACGAGTTGAAGAAACACGTAGCCAAACAATTAAGGAACAAATAG
- Protein Sequence
- MDRLNQLRSEAGGSGDSSLDTSSAASEAYLTANENSKYFSVLEDEANFTITKDVNSDQEVVADNSMISSLSPIPKSSDLDNYKIGKQIEAANILSGGINIFEDNENSYDGDELVIDDNAPESEEKVNLDDKMIEDIPFGKVEDNLAGNLDDVEPVIPSKDTEVVLQIDGKNVDAIDIGNGLYLYRKDGEEELAAVQIVNEDQQQSSFKFLKVRENSEGNLEVYEEIEIEVPKEVPVKEGKSTENLSHIPIKEINKVISEPDKVEEKKITTPQKETPTNEINVDLSKESQSDSKSEVNLNGKMMKFSESRKSPVVGSFTPMTYHSTPNKEGIPLTKTMVDQQLHPSRHSDNVKKTIEVHTDSSKQKNLDAPVKNLKEMDETNEPIKQDMELKQTSEENNDNETPPDKSVVDSQDTTLSNKGKEENVNKISLEEINSDETFAQKDEPVFEEKIMDTPKIEEEMEQIPNDTNNPTIVKNDVIIGNCVEVQNISKDEVDSTHDCIKKSVQECEVTEVDQTIANKKVEEIQTEQTLESNLETVLEKETKCSTIPSSSSPEISSKAVKDIPIKKLEAINDSVKANDKAQLEKNETNKVTENKPPESKNMITNETKTDKNEQSIFDLPKSSSKQQEIKNNKKEEQDNSKIIIKKSAKVETIDHKALESNVTAPKTVELKDKNKTFDSLKKVQPNIKTESKKEIPKIAKQISTKAVNNNNAAVPFGKWTEANRQEFLNKIKETKVTTNSSNTKQLKQPNDLNRRDVLQKIDSQRQQTNNAMAKVQEQQKLSSNKNETAVFVKSAVKPDTKPTVKDRPASKIKPMSSKKTTKADTSANHQTDSASLPISNTNKKELLQIREINNQALIDKTVEDIINRVPPAKTTNRERTQNNSNMEGVEKQKGMTLFGPSYHANNNQPVTLDEIETKMNELHGIPFVERPAHELPQKFAVDNILSVKNDSSKSKPTNETNLLSQSKATVQPTNVIVHIDSDDEIIEHEPITGDVIPKKIALEDAHNLEMQLTHKASDESKKEVIITEKDFDKFYRRNSVNYENCLTVTLDGKESHNVVQTVTVEKDMAPKKLTRNEVLLAESKAKSTHKQQMLQARHSNYQSKIPVSNKHQTSEEESYGKNYQSKVQIAYHTALTAKRQKESPITIIEEKPVKVVFMDSSVDFVPSQLNVQGEKLSPIKQFTPDLETFTHSTTDSLDSDILDNYDNKAQEETKTKSRHQRKQVLTPVEAPEMELIQSDDLLIETSPKKRRRIEDRLEKSPKNHVPKKSYLLGRTNADDKLKMPEVDKVAFNDINSHTNTYIAHPNPISAIDNLVKAAELLENQAENSSSSIKTQESDTSLQTPPKRGRGRPRKYPLPDTDSDKSKAPSPQKKPRLIDAKIPKPAKVPSPEQTDEDTSDDEMIKENWTMGKINENIVCPICNKLFRSENVVFKHVKHCTGPSPNRSESDKRRFRESQEFETRSRASKSDDMDLEEEEIITPKKRKSKESVTKASNSDEDIEEMVNKEKPAKQHESRKSTAKTKNVSKPNTDIVCEVCGKSFRHLSYLAHHKLQHKSDDSKKNDSEANVNKSVFSCETCKKEFRKLHHLVQHRIIHNPSSMPTRTLRKSSSEQGDNKIVKEQTALKQTEDHSAGFRCEPCDKSFRKLHHLVEHRETHDGINRQKAIEVETPKPQLHQCDMCEKTFKKIQQLNEHKEQHLETCSEKSDKSVKSSFSSTKDIIHECSLCYMVFPNELSLNKHTEKCLRKKKQSIARAKQAALKKELEGETLDTESQSEECLNEKDDSLIIVEDNDEESLEPINITQNKLEDHKHIGDSLAGNSEADKSKNVEILSRECKDIDNTTTIKQEPIKKSIEPNEKIVEPTVTEIVINKEDIIPQHIPSKIQNDENLKPKDNDTLVHKKKNIHKEKVVPTITKRKKSFNTPVPAIETVKPSIESSDEDDVRYMLNPDFKEETSMEERSFMKIKTKKRNSLHFERPSSRDLLKRRISMQLPLKTTRTKKSIEQTPVAPTSSDKSTAKANEKPTTVTDSDDSDTKYAFPETVKDTPTTSEVKKPQKRKSIATKRKLLSGVVKRKSLGKPTKVKHKLIPEPVKPIRKRTTEVEHRCDCGKLFSSAALLSRHTTLDHTPPRSRRRRSPPPELDATVAKVTRKTTPKKNVKTTVQAKKIDDTRKSGVATRKSTTNIDGKPSRDTRKSVKGAHRGVPVPDELKKHVAKQLRNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149168; iTF_01145565;
- 90% Identity
- iTF_01149168;
- 80% Identity
- -