Ppol006493.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:708518-718819[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3 1.6e+02 2.5 0.3 1 10 183 192 183 205 0.67 2 14 2.3 1.2e+02 2.9 0.2 3 13 242 252 240 255 0.85 3 14 0.068 3.5 7.7 0.5 1 22 260 281 260 281 0.94 4 14 0.0093 0.48 10.4 0.3 3 23 292 313 291 313 0.93 5 14 1.4 72 3.6 0.3 1 21 350 370 350 371 0.93 6 14 0.068 3.5 7.7 1.9 2 23 377 397 376 397 0.89 7 14 0.0076 0.39 10.7 2.2 2 19 762 779 761 780 0.95 8 14 2.2e-06 0.00011 21.8 2.4 2 23 789 810 788 810 0.97 9 14 0.47 24 5.1 0.1 2 23 935 956 934 956 0.96 10 14 8.6e-06 0.00044 20.0 3.9 1 23 962 984 962 984 0.99 11 14 0.02 1.1 9.4 1.1 1 23 989 1011 989 1011 0.97 12 14 0.00059 0.031 14.2 1.0 2 23 1018 1040 1017 1040 0.96 13 14 0.17 8.8 6.5 4.2 1 19 1045 1063 1045 1064 0.89 14 14 0.0027 0.14 12.1 0.7 3 23 1077 1098 1076 1098 0.96
Sequence Information
- Coding Sequence
- atggaaGACACTTCGCAGATAGAgtttaacataaatgttaaagtagaAGAAATAGAAGAGGAAATAAATACAgaagaaacaaatgaatctCTCAACAATGTTTCAAATGAACAGTACAATGAACCATTCTACGCTCAAGTTCTTAGTACAGATAATTCTGATAATGAGAACATAAGTGAGAATTCTAACTCTTTGGAACCTACATGTAACAAAGAGGATAACTCAAATGAAGCAGGGGCAACAAGCAGTGCATTTAATCTGGAAATCTGTAATTCTTTGGAATCAGatgatgaaaaaaaattctttgtcatccaaaaaaattttatatacacaTTAACAAGAAAAACTATACTAAAAGGTATAGAAGAGCAAACGAAATCGCTAAAAAGTAAATCGGattcacttttaaatatatttacacgaACACATCATCCCGAAACATACATCCATGCGAAAACTGTccatgaatatttattagagaATGCTATAGATTTATGGAGGAATTGGTAtgaaagaaatacaaaactaaGGAACACACCCCtttcatacaaatgttatatatGTAATAAGGGATGGTGGAGATTGAATCCGTTTAAACAACATATAATAATTCATAAACACccacaatttttaatatcattcgAAGGTGTTGGTAACGAAGGGAATATAGTCGCAAGTATTAATTACccaaaactaaataatacaataacaataaatagtaATTGTTGGAAATGTGATAAACCATACAAAAGCCATGCTTTAACAGTATTATCGAAATATACTTGTGATTCATGTTGGATGGATTTTAAAACTTGCATAGAGTTGGCACAACATGAAAATACATGTAAATCTAATTTACATGATGGTCtgttatgtaatttatgtcCTATGTATTTTGCAAATAAAGACCTTTTGTATAgacataaaattttgtatcaCACACCAAAATCGGATGACCCAGCAGTAATAGTGACAAAGATATGCAATTTATGTGAggagaaatattattttgttgcttACCATGATTGTCCGAAGCGTCccaagttatttaaatgtgatttttgttGGAATAAATATGTATCGAAACCGTTACAAGAGTTACATATGTCTATGAATAAAGGTTTTACTAAGTGTCCAGATTGTTCTAGAAATTTTAGGAATTGCTTCCTTATTGAACATTTGATAGAACATTCTTGTAATTACAGTGTTAtacaatattgtaataaatgtaaatacgaCGTACTTTACATTGACAAAAGTCGTTTTGCTAGACATATGGTGAAACATGAAACTGATGTTAGAAAAAAACGCTATACTGTTaagATGTTATTGCCTATGAAATGCTATCAAGGAATTGTATATGATAGTGCTATTCCTCTTGATATATCTgGTAGCCATTTACTTGGATATTTAGATAATGTAGGGTACACAAATTACACATTACCAAAACTTCTAgctttaatttacaaaatacatatacaaaactcacgtaataaaaagaaaataaaagagaaaaagaaaacagaaatacaaaatcaaCCTAAGAATGTTGAACAGAgtgatttgaataaaaaaataactaagaaAGTAACGCTGCATTCAATTGTGAAGAATTCAAAAGATGATATCGAATCTGATATCGCGTTTCAACAACAATTAGACGCTGAAATAAAGAAAGATGTTGAAATCGATAATGAAATATctgaattgtttaaaacatctagtatttataagaaatttcTAGATAAAGAAGCTAATGATCCGATAGAAGATAATGATGTTTGTATTATTGAGGAAAAGAAAGAAGTATTTGTGATATCAGATACCGATAGTGAGACAtcagaaataataatagattcGATTTGTGAAGATGTTCCtgatattaatatgataaatagatttaattctaatatgttttatgaaaCAGATACTACAAGTAAAATAGAATGTAATGaagataataatgaaatagaaGTACAAGATACAAATGAGAGTGTAAGAGAAATCAAAAGAGAAGATAATACAATTGAAAATATCTCAAATGAAATTAGAGAAGAAActcaaattaaagaaaattcagTTGtagattttcttaataatgttgaaaaattagattttaaaattgaaaatgataatttagATAATGAAGAATTCGAAATGGAAATATCTGATTATAAGATAACAATGGTACAAACAGATTATCCatattgttgtaaaaattGCAGATATAACGGCaattatgaagattttatAGCTCATTTATTGAGTTGTCGTAAACATATGAAATGTACATATTGTAAGAGAACATTTTCCGATACGaaatcgtatttaaaacatttcccagaacataaattgaaatatctctCTTGTCCTCAGTGTAATAAGAAATTTAGCGTTCTACATAACCTTAAAAGACACATTTTAACGCATAtacatgaattattttttacaatacctGAAGATTccgaaaaatatataaataacaatacttttttatgttatgtttgtGATAATGTCGTTgaaattgacaattttttcatacattgGGAATCTCATTTGGAATTAATTGAAGTTGCAGTCGATGAGGTGTCGGAAAATGTCTCTGAATTGAAAAGTATGATGACACCTGAAATGGTAAAACGAGCTTTAgTTATCCTATCGGACACAAGCAGAGATCATaagaacaaaaaatgtatagtatgttctaaaattaatgtaagaaaaaatgaCAGCAAGAGACATTTAACCGAACATCTATTACATGAAGCTAAAGTGAAGATGATTGCCGAAGGTGGGCAGCTAAAATGCCCCATGTGTGCTGAGGAAATCAAGGAGTTGTCAACTTGGAGACAGCATGTCCGAGAACATGCCCATATCAGGATATATCAGTGTTCTTTGTGCTATAAAAAGTTTAGTGATTCaagtaattttagtaaacatAGGAAAGTGCATAATCAACATAATTATATCTGTGATCTGTGCGGTGGAAAGTTTTGTGCTAAGACGAGTATTATACGACATTTAAAGAATCACGAACCTATGACATCAATGCAATGCCCAAAATGCGATAAAATACTTCCCTCTGAGCATAGATTGAAAAGACATATACAAGTTCGAcatataaattttctattcACATGTCACGTGTGTAATAGAAAATTCAACACTTGTAAGGAGAAATGGGATCATTTAtggaataaacataaaataagaaaatatgtaGCTGATTGTCCGCTCTGCAGTAAACAGTATAGACGGCTTATAGATGTTAAAAACCATATGAGATTTATGCACGGAATTGATAAAACTGAAGGATCATATAATACGACATACtatgaagttaaaaataaaaagaaaataaaaagggaACCAAAGAAACCGGTATCGGAGACTCTTAGTAaagatatttcataa
- Protein Sequence
- MEDTSQIEFNINVKVEEIEEEINTEETNESLNNVSNEQYNEPFYAQVLSTDNSDNENISENSNSLEPTCNKEDNSNEAGATSSAFNLEICNSLESDDEKKFFVIQKNFIYTLTRKTILKGIEEQTKSLKSKSDSLLNIFTRTHHPETYIHAKTVHEYLLENAIDLWRNWYERNTKLRNTPLSYKCYICNKGWWRLNPFKQHIIIHKHPQFLISFEGVGNEGNIVASINYPKLNNTITINSNCWKCDKPYKSHALTVLSKYTCDSCWMDFKTCIELAQHENTCKSNLHDGLLCNLCPMYFANKDLLYRHKILYHTPKSDDPAVIVTKICNLCEEKYYFVAYHDCPKRPKLFKCDFCWNKYVSKPLQELHMSMNKGFTKCPDCSRNFRNCFLIEHLIEHSCNYSVIQYCNKCKYDVLYIDKSRFARHMVKHETDVRKKRYTVKMLLPMKCYQGIVYDSAIPLDISGSHLLGYLDNVGYTNYTLPKLLALIYKIHIQNSRNKKKIKEKKKTEIQNQPKNVEQSDLNKKITKKVTLHSIVKNSKDDIESDIAFQQQLDAEIKKDVEIDNEISELFKTSSIYKKFLDKEANDPIEDNDVCIIEEKKEVFVISDTDSETSEIIIDSICEDVPDINMINRFNSNMFYETDTTSKIECNEDNNEIEVQDTNESVREIKREDNTIENISNEIREETQIKENSVVDFLNNVEKLDFKIENDNLDNEEFEMEISDYKITMVQTDYPYCCKNCRYNGNYEDFIAHLLSCRKHMKCTYCKRTFSDTKSYLKHFPEHKLKYLSCPQCNKKFSVLHNLKRHILTHIHELFFTIPEDSEKYINNNTFLCYVCDNVVEIDNFFIHWESHLELIEVAVDEVSENVSELKSMMTPEMVKRALVILSDTSRDHKNKKCIVCSKINVRKNDSKRHLTEHLLHEAKVKMIAEGGQLKCPMCAEEIKELSTWRQHVREHAHIRIYQCSLCYKKFSDSSNFSKHRKVHNQHNYICDLCGGKFCAKTSIIRHLKNHEPMTSMQCPKCDKILPSEHRLKRHIQVRHINFLFTCHVCNRKFNTCKEKWDHLWNKHKIRKYVADCPLCSKQYRRLIDVKNHMRFMHGIDKTEGSYNTTYYEVKNKKKIKREPKKPVSETLSKDIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -