Ppol006540.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:719399-731452[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.3 2.8e+02 1.8 1.0 1 10 334 343 334 351 0.79 2 10 0.00013 0.0068 16.3 0.3 2 23 388 409 387 409 0.97 3 10 1.3 65 3.7 0.2 1 23 424 445 424 445 0.88 4 10 0.002 0.1 12.5 0.8 5 23 489 507 486 507 0.93 5 10 0.15 8 6.6 0.0 2 23 523 544 522 544 0.95 6 10 0.024 1.2 9.1 1.7 1 23 551 573 551 573 0.96 7 10 0.00046 0.024 14.6 0.1 1 23 577 599 577 599 0.96 8 10 0.00079 0.041 13.8 0.3 2 19 606 623 605 623 0.96 9 10 0.36 19 5.4 4.0 1 20 631 650 631 654 0.92 10 10 0.038 2 8.5 4.6 3 23 663 684 662 684 0.96
Sequence Information
- Coding Sequence
- atgtTGTTACCCGTCAAATGCATAAAGGGCGTGATATGCGACAGTATAGTTCGTTTACAAGTACCTGCAAAAATTCTACATAAACACATAGTTGATTTGGAATATATGAATTACACACCTCTTGAGTTAttcgaaataattaaaagtaaaaaaactaaggAAATAACAGAAgcttgtaataaaagtaatacaaacaaaactacGTCTGTTAATAAATGTAGGAATCTAGAACAAAgtgttattactaaaaaattaaataaaaaacaaataataactcgaacagtaaacaatttacaagatGACATCGATTTTGATGTCGAATCTAATAATGCATTCCAAGTACAATTAGACGCTGAAATACAAAGAGATGTTGAAATAGAGAAGCAAATATCGAAAGTTTTTGAAGCATCTGATTGTTACAAGAAGTTTCTAGATAAAGAAGCAAATGATCCAATCGACGATACTTACGATGTTTTGGATAATACTGTTTCAAATAATGatgaatatttgaatacaGATACGAGTACTGAAGAAAATTCTGATACCGATATTCAAAATGAAAATCAATCAGATATggaatataatgaaatatttaaatgtaatattaaaacgaatgTAGATAAAATGGAAGattgtaattcaaataaagaaaaatctaaACAAGAAGTAAATGAAAGTATAAAGAAagttgaaaaagaaaatattaataaaaaagatacagatttaattaatttaaacattacagAAGATAATTTGATATCCAAAGATAGTGGAagtgaaatagaaaaatctgATATAACTAAAGATTTTAACGATAAAGTGACATCAGATTATTTGAATGCAGTTGACAATTTAGATACAGATATTAAAACTGATCCTagtatcaatataaaaatagatacatTTAATACAGATATCGATGGAATCTCAGACAATATAGTACCTAAATATAGtgacaattatataaaaattaatacagaaAACATATCTGAACCTAAATATTCTTGCAGTGATTGTAAATATACaggaaattataaacaatacgTAGATCATTCAATATCTTGTATAAACAAGTATATTAATTGCATATATTGTATGAAAAGTTTCCAAAACATAAAATCGTTTTTAAACCATTTTCCAGAACATAAACTGACATATTTATCCTGTCCCCAATGTTTTGAGAAATTCaatgatataattaatttaaaaaatcatattttaacacataTATATGAGTTATTCCATTTACCGAATTCAGGATATGAAGGTTATAAATGTTCTTTATGCGAAGAATCAGTTGATAttgataaatttttcatacattgggaatcacatttacaattgaacgAAGGTAATATGGATATAGACAATGAgattgaagtaaaaaaaataatgactcCTGAGATGGTAAAACAAGCTCTCGtTATTCTAACAAAGATAAGAAATCACAATCTATTATGTATTGTGTgcagtaaaatgtttacaaacagTATAAAACTCAAAAGACATTTGATTAACCATTTACTATACGAAGTTAAAATAGATATGCTTAACGGGGCTAAGTTAACTTGCCCTAAGTGTCGTATAGACATCAAAGATATCGATAATTGGATAATACATATGGAACAACATTCTCATTTACACagtatatatttttgcaaATCTTGTCGTAAAAGTTACAAGGATCCAATTCTTTTTGATCAACACAAGGaaatgcataaaaaaaaatacgtctGTGACATCTGTGGTAAGAAGTTTTTTGTGGAATCCTTGATTATACAACATCTTGAGaaCCATGAGCCtgtcaaaattattacttGTCAGATATGTGACGAGGTATTCCGTTTCCAAAGTCAATATAAAAGTCACGATTGTATGCCATTACTGAGGTTCTCTTGTACTCTTTGTGAGAGAAAATTCCGCACTTGTAAGGATAAATTGAATCATTTAtggaataaacataaatttagcCGCCACTCAGCTGATTGTACACTTTGTGATAAGAAATATAGACGATTGCGGGATCTGAGATGTCATTTGAAGATGAAACATGGAATAAAGAGAAGTGACGAGTTTGATAGATTGAGGGAATAA
- Protein Sequence
- MLLPVKCIKGVICDSIVRLQVPAKILHKHIVDLEYMNYTPLELFEIIKSKKTKEITEACNKSNTNKTTSVNKCRNLEQSVITKKLNKKQIITRTVNNLQDDIDFDVESNNAFQVQLDAEIQRDVEIEKQISKVFEASDCYKKFLDKEANDPIDDTYDVLDNTVSNNDEYLNTDTSTEENSDTDIQNENQSDMEYNEIFKCNIKTNVDKMEDCNSNKEKSKQEVNESIKKVEKENINKKDTDLINLNITEDNLISKDSGSEIEKSDITKDFNDKVTSDYLNAVDNLDTDIKTDPSINIKIDTFNTDIDGISDNIVPKYSDNYIKINTENISEPKYSCSDCKYTGNYKQYVDHSISCINKYINCIYCMKSFQNIKSFLNHFPEHKLTYLSCPQCFEKFNDIINLKNHILTHIYELFHLPNSGYEGYKCSLCEESVDIDKFFIHWESHLQLNEGNMDIDNEIEVKKIMTPEMVKQALVILTKIRNHNLLCIVCSKMFTNSIKLKRHLINHLLYEVKIDMLNGAKLTCPKCRIDIKDIDNWIIHMEQHSHLHSIYFCKSCRKSYKDPILFDQHKEMHKKKYVCDICGKKFFVESLIIQHLENHEPVKIITCQICDEVFRFQSQYKSHDCMPLLRFSCTLCERKFRTCKDKLNHLWNKHKFSRHSADCTLCDKKYRRLRDLRCHLKMKHGIKRSDEFDRLRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -