Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:138864-157172[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.9 96 3.2 0.2 3 20 268 285 266 289 0.74

2 12 0.76 39 4.4 0.4 1 23 312 335 312 335 0.95

3 12 0.00015 0.0077 16.1 0.5 2 23 359 380 358 380 0.96

4 12 0.038 2 8.5 0.2 2 21 385 404 384 405 0.92

5 12 0.41 21 5.3 0.2 1 23 446 469 446 469 0.94

6 12 0.024 1.3 9.1 0.2 2 23 495 517 494 517 0.95

7 12 0.0086 0.45 10.5 0.8 2 23 541 562 540 562 0.95

8 12 9.3e-05 0.0048 16.7 0.0 1 23 566 589 566 589 0.97

9 12 0.59 30 4.8 1.0 1 23 593 616 593 616 0.97

10 12 5 2.6e+02 1.8 0.6 1 23 621 646 621 646 0.87

11 12 0.29 15 5.7 6.6 1 22 655 676 655 678 0.88

12 12 0.00023 0.012 15.5 1.1 1 23 688 711 688 711 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.9	96	3.2	0.2	3	20	268	285	266	289	0.74
2	12	0.76	39	4.4	0.4	1	23	312	335	312	335	0.95
3	12	0.00015	0.0077	16.1	0.5	2	23	359	380	358	380	0.96
4	12	0.038	2	8.5	0.2	2	21	385	404	384	405	0.92
5	12	0.41	21	5.3	0.2	1	23	446	469	446	469	0.94
6	12	0.024	1.3	9.1	0.2	2	23	495	517	494	517	0.95
7	12	0.0086	0.45	10.5	0.8	2	23	541	562	540	562	0.95
8	12	9.3e-05	0.0048	16.7	0.0	1	23	566	589	566	589	0.97
9	12	0.59	30	4.8	1.0	1	23	593	616	593	616	0.97
10	12	5	2.6e+02	1.8	0.6	1	23	621	646	621	646	0.87
11	12	0.29	15	5.7	6.6	1	22	655	676	655	678	0.88
12	12	0.00023	0.012	15.5	1.1	1	23	688	711	688	711	0.96

Sequence Information

Coding Sequence: atggaaGCAAAAACATCGGAATGGCGACCGGGCCCTACCGTATGTCGATGTTGTCTTACAGAAGGTTGCTACAAAGATATATCTACTGAGTATTTCTGGATGGGAAAACGAGAAGTATACGCAGAAATGCTTGCCGATACATTAAACTTAACTATTGCCTACTCCCAATCGGGTGGGCCGAACAGTAATAGTCGTTTGATCTGCGAGCCCTGTATATCTCGACTCCGTGATGCAGTTGAGTTCAAACGGCAGGTGGAAGAGTGTGAGAAGACATTCCTACAGCACTTGGATCCCAGCACATCGGGTGTTACTCAAGACGAGTCACATGAATCCATATTAAAAGGGAAGCAGGTGAAAGTTGAAGTTGTGAAGCTGGAAAGGTTGGAgagtgatgatgatgatttccAACAGTCACGTTTcagtgatgatgatgatgatggaatTGATGACATAGATGATCAACCATTAACAAAACTGGCCAAGACACCAAAGAAAGAATCTGTGGACTTATTGGATTTGCTTGATAATGCCAAAGTGGCTGAGAAAAGAAAATCAACGACCAAAGTGAGAGCCACACCCGTTAAGAAGGCTAAACCGAAGAAAGAAACCAAAACAAGCAAGGATAAGCCTGAGAAGAAGAAAAAAGgGCCCAGAAAGGAACTCGAAGGATTAAAGAAAGAGAATAAACCAAAAAGACTGTTTGAAAGGTCTGTGAACCAGAACCCACAGCGACAAAACGCCGTGCTTATATTGAAGCATTCCAACGCGTTTCCATTTAAGACTCGTTTTAATAGAATCATTTGCTCCTACTGCCACGAGGAGTTTCAAAATATGATAATACTTCGCGAGCACGTTACCAACGAACATTCAAATGCAGATTTCAATAGTGCGTTTTACAAAGTAATAGACGATCTTAAAATAGACATAACCCAATTCAAATGTAAACTTTGCTCACTAGATATGGCGAATGTTGATACGTTTATGACACATATATCTAGAGATCATGGTATACCGGTTAATTTCGATGTACCCTTCGGCGTGCTACCTTATAAACAAGGTCCCACAGGACTCTGGATGTGCTTAGACTGTTACAAAAGTTTCACAGAGTTCTCCCAGATTAACGCCCATCTGCGAActcatgttaaaatattaacatgcgATAAATGCGGAGCTACTTTCCTGTCCAAACAGGGGTTGCGTCAACATGAAAAAAGTTTCAAATGCAACAAAGCGACATATAAGCCACGCTTCGGTAAAGCGCTCAAACATCGCAGTAATACTGAAATAATCCTCCAATGTTCGACAGCTTGTCCCTTTCGGACCTGGGGGCATAATTTTAACTGTGTATTCTGCCGAGTTCAATCTAACGACCCAGTCGGATTAAGAACTCATATGGCGAATCGTCATGCCAACTTTGATATTCAACTCGTGTTTAGTAGGAAATTGCGAAAGGACTTTCTTAAAGTCGACATTACGGACCTTCAATGTAAGCTATGCTTTATGTCAATAGACACGCTTGATGAATTGATGGCACACCTCAAGAATGACCACAAGCAGCCGCTGAACTTTGATGTTCAACCGGGAGTGTTGCCTTTTAAACTGAACGACGGCTCCAGTTGGAAATGTGCTATTTGCAAAATGCTCTTCTCTAATTTTATATCCCTTAAAAAGCACACGTCGGAACATTTCCATAATTACGTGTGTGATACTTGTGGTGAAGGTTTTATAACTGAGAATGCTTTGATCGCTCACACGAAGGTGCCACACGATAATAAGTACAAATGTAGCCGATGTATATCGACGTTCGCGACATTAGAAGAAAGGAATTCACACGTTAAGACCCAACATACGAATTTACCGTATATGTGCGTGTACTGTAAAGATAAGCCAAGGTTCGGTACATGGGAACTGCGTAAGCGACATCTTATGGAGTTTCATAACTTCAAGCCGAGGACTGAGATGTACGAATGCACGACTTGTCATATGAATTTCAAAACGAGGTCCCAGAAATATCATCATAATGTTAAAACTCATCGCACCAAAATGGAAACTGAATTTGGATTTCCTTGCGGACATTGCTCTAGGGCTTTCGCGTCGAAGTTATCTTTAGACAAACATATGGCTAAGAAACATTTTCACATCTTATAG
Protein Sequence: MEAKTSEWRPGPTVCRCCLTEGCYKDISTEYFWMGKREVYAEMLADTLNLTIAYSQSGGPNSNSRLICEPCISRLRDAVEFKRQVEECEKTFLQHLDPSTSGVTQDESHESILKGKQVKVEVVKLERLESDDDDFQQSRFSDDDDDGIDDIDDQPLTKLAKTPKKESVDLLDLLDNAKVAEKRKSTTKVRATPVKKAKPKKETKTSKDKPEKKKKGPRKELEGLKKENKPKRLFERSVNQNPQRQNAVLILKHSNAFPFKTRFNRIICSYCHEEFQNMIILREHVTNEHSNADFNSAFYKVIDDLKIDITQFKCKLCSLDMANVDTFMTHISRDHGIPVNFDVPFGVLPYKQGPTGLWMCLDCYKSFTEFSQINAHLRTHVKILTCDKCGATFLSKQGLRQHEKSFKCNKATYKPRFGKALKHRSNTEIILQCSTACPFRTWGHNFNCVFCRVQSNDPVGLRTHMANRHANFDIQLVFSRKLRKDFLKVDITDLQCKLCFMSIDTLDELMAHLKNDHKQPLNFDVQPGVLPFKLNDGSSWKCAICKMLFSNFISLKKHTSEHFHNYVCDTCGEGFITENALIAHTKVPHDNKYKCSRCISTFATLEERNSHVKTQHTNLPYMCVYCKDKPRFGTWELRKRHLMEFHNFKPRTEMYECTTCHMNFKTRSQKYHHNVKTHRTKMETEFGFPCGHCSRAFASKLSLDKHMAKKHFHIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149929;
90% Identity: iTF_01149929;
80% Identity: -