Ppol006547.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- ZNF131
- Assembly
- GCA_000836215.1
- Location
- NW:1144362-1153560[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.37 19 5.4 1.4 1 20 259 278 259 279 0.95 2 9 0.34 18 5.5 9.3 1 23 383 405 383 406 0.96 3 9 5e-05 0.0026 17.6 2.1 2 23 411 432 410 432 0.97 4 9 0.53 27 4.9 2.0 2 23 440 460 439 462 0.87 5 9 7.6e-05 0.004 17.0 0.7 1 21 466 486 466 491 0.94 6 9 0.0011 0.055 13.4 0.7 1 23 499 522 499 522 0.94 7 9 0.00021 0.011 15.6 0.2 1 23 528 551 528 551 0.97 8 9 1.5e-05 0.00076 19.3 1.0 1 23 561 583 561 583 0.94 9 9 9.4e-05 0.0049 16.7 1.2 2 23 590 612 589 612 0.95
Sequence Information
- Coding Sequence
- ATGAACGATACATTGAAAACTTCGAGATTGAAACGTAAAATCTGCAGAACATGCCTCAGTTCTGATCGTACTACcctaatattaaatgaacaaTCGGATTTATATCAAGTTTATCGACTGATAATATCAGAATTCACGACTGATttGGATCTATCTGATCAGAGCTTAGAGGCATGTTGGGAGTGTATTGCTATGTTGAAAAAGTTCAACAACTTCAAACGGCAAGTCCAAACAGCTCAAGAACATCTTCGAGGAATCGGTGAATCGgacCCGAACCTTGCATTATTTTCTCAGCCACTATCTTCTCTGCAGATACTATTAAAGTTAGGATATGACAAGGTATATGTTGAAAATACAATGCAAACAGAATGTTCACAAGACATTAACACATTGGAGATAGTAAAAAATGAACCTGTAGATATAACTGAGAAAGATACTGGACATGAAGATACTTTAGGAGTTCCAGGCATATTGGATAATGATTCAGTATCACATATAGAGGTTAAAATAGAACCTTTAGCTGTGGACATAGAGCAGAAAGATCACAATATACCAGAAACACATATATTTGgGACAATAAAAGACCCTAATCAGTCAACATTACTAGAAAAGTCACTTCTCACAGAACCTGTGATAGAAGAgcaaagaaaaaagaaacgtattaaaaataaatctgatCTAAGGTGTGGATATATAACGGAATATATGAATGAAGATGACATGCTTGCTTTTAGGGAAGAAGCAAAGAAGAAAATTTACTATGCGGATGCTGCATACAAGTGTGAAAATTGTATCCTTGGCTTCTATACTAAACAGCATTTTGAGGAGCATTACGAATGTGCACACAAACCTAGGGAGGGCACCGCGCCGTGCAAGGTGTGCTACTCGTACGTGGAGGAGGGGCGCGTGTCGCAGCACGTGCAGGGCCACTACGTGCGGCTCGTGTGCCGGCTCTGCGGGCACGCCGAGGCGAGCGTGCGCTGCGCGCAGCTGCACGTGCAGACACATATAGAAACCGAGACAGACTCAAAGCCTGTCAAGATTCGACCAATGCGGATGCGTAGACAGAAACAGAGCAAGGAAGCGCAAGATATCAATGAAGAGGCTAAAAGGTTGAGAAAACTCTTGTCAAAGACAAAATCTGGGTACAAATGTCTTTACTGTGACATGCACTTTGAgCATACACGATACCGTAAATCTCATATGGACAGACATCACAGGGAGCGTCTTCAATGTGACCATTGTCAGAAGAAATTCGTCAATAGAACTACTTTGATAGGACATTTAAGGTTACACGAAGGTCCCTTACCACGTCAGGAATGTACCATCTGTCACAAAATGGTACgagttttacaatttaagtaCCACTTACAAAGACATGAgaacaaacaaacatatgAATGCAAGGATTGTGATAAGGTTTTCTCAACTTTGATGACGTATCAGGGACATCTTAAGTATTCTAGAGCGCATGCTTCGGATCAGATACTCAAATTCCCCTGTCCGAGGTGCAATAAGGGCTATTCCACACAACAAGCGATGCAGGACCACTTTAATTATCAACATTTAGGAAAAACATCCCATAAATGTCCTATTTGTGATAAGCCTATAGCATCTAAAGCGTATATAGAACGTCATCTAATGAGGGTACATGGAGAAAAGAAGGAGAAACCAAAGAACCACGTCTGTCAGCAATGCGGCAAGGGATTCACGGATAAAAGATCGTTAACTCAGCACGAAGTGATCCATTCGGGTAACAGACCTCTCTCATGTGATATATGTGAACAGACATTCAAACAGAAAGCCACGTTATATACACATAAGAAGCGAGTACATAATGTAACACCAGCTAAGAAGGTTCTGGAATTCATCAAGGAGAAAGAAATGGAAGAATCGAGTTGA
- Protein Sequence
- MNDTLKTSRLKRKICRTCLSSDRTTLILNEQSDLYQVYRLIISEFTTDLDLSDQSLEACWECIAMLKKFNNFKRQVQTAQEHLRGIGESDPNLALFSQPLSSLQILLKLGYDKVYVENTMQTECSQDINTLEIVKNEPVDITEKDTGHEDTLGVPGILDNDSVSHIEVKIEPLAVDIEQKDHNIPETHIFGTIKDPNQSTLLEKSLLTEPVIEEQRKKKRIKNKSDLRCGYITEYMNEDDMLAFREEAKKKIYYADAAYKCENCILGFYTKQHFEEHYECAHKPREGTAPCKVCYSYVEEGRVSQHVQGHYVRLVCRLCGHAEASVRCAQLHVQTHIETETDSKPVKIRPMRMRRQKQSKEAQDINEEAKRLRKLLSKTKSGYKCLYCDMHFEHTRYRKSHMDRHHRERLQCDHCQKKFVNRTTLIGHLRLHEGPLPRQECTICHKMVRVLQFKYHLQRHENKQTYECKDCDKVFSTLMTYQGHLKYSRAHASDQILKFPCPRCNKGYSTQQAMQDHFNYQHLGKTSHKCPICDKPIASKAYIERHLMRVHGEKKEKPKNHVCQQCGKGFTDKRSLTQHEVIHSGNRPLSCDICEQTFKQKATLYTHKKRVHNVTPAKKVLEFIKEKEMEESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149073;
- 90% Identity
- -
- 80% Identity
- -