Ppol006719.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio polytes
Gene Symbol
-
Assembly
GCA_000836215.1
Location
NW:2862285-2864849[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 2.8 1.4e+02 2.7 6.9 2 23 207 229 206 229 0.91
2 10 0.00024 0.013 15.4 1.1 1 23 235 257 235 257 0.98
3 10 0.46 24 5.1 7.4 1 23 263 286 263 286 0.94
4 10 0.013 0.68 10.0 2.1 3 21 294 312 292 313 0.90
5 10 0.00045 0.023 14.6 6.6 2 23 335 356 334 356 0.96
6 10 5.8e-06 0.0003 20.5 2.2 1 23 363 385 363 385 0.98
7 10 2.9e-05 0.0015 18.3 0.3 1 23 391 413 391 413 0.97
8 10 4.6e-06 0.00024 20.8 2.1 1 23 419 441 419 441 0.96
9 10 5.6e-06 0.00029 20.6 4.0 1 23 447 469 447 469 0.99
10 10 6.5e-06 0.00034 20.4 2.7 1 23 475 498 475 498 0.97

Sequence Information

Coding Sequence
ATGACCAAAGTTGATAAATATTGTCGGTTGTGCGCCGAACCAActgaacatttaatttatgctGACGAAGAAGCAGCTCTTAATTCAAAGATTGCAAAGAAGATGCTGTGGATTAATATCGACGTTTCTCCTTCAAATATGCTCCCTAAAAGTATATGCTATTCATGTTTTGATCAATTAGAAAGGACTTGGATTTTCCTCAAGAATGTCCGAGAGGCGCAGGAAAAATTGTATCTATTATTTCCTACCATCAATGTACACAAAGCTAAATCAGGAAAGCAGTCATCCGAAGTGGCAAACCCAGTTGATATGAATTGGGATGATTTTCAGGATGTTAAAGTTGATATAAAAGATGAAGACATCATCACTGTGAtcagtacaaataaatttattgaaggtctagagaatttaaaaagagaaCAGTGTCCTGAAAACGACCAGGATTTTGTGACTGAAGACAATGGATTCAGCAGTAGTACAGATAGTGATGAGCCCTCTCTTGTCACAGtcaaaaagaataaaagtaaaaagcgAGTGTCACAACAGGAGGatgataaaatatacatagaaCCCGTTGACATTGCTGACCTGGATGTGACATGGGAGGAGGAGGCTTGCCGCTGTGCCCACTGCGATGCTCAGTGCAAGAACATCTCATTGTTAAGGTTACACTCCCAGCATATACATAATAGctgttgtgtttttaaatgtgtcaGCTGTGGTAAGGTTGTttccaattttaaatcatttgtcAAACATTTGCGACTGCACAAGCATATGCTTAATTATTGCTGTGAGTTCTGTGACAAAAAGTTTACAATGACTAAATTCATTAAAAGACACAAACATGTCGAGCATGGCGGTGGGAACTTAACTTGTTGCAGGAAATGTGGCACGAGTTTTGACACGGTGGAGCAGTTGCATGACCACTTAGAGAAATACAGCAAAAgcattaagaaaatgtttaggAAAGCCGTTGATAAAACGGATGAACAAGACTTGAAGTGCAACCTTTGCCACAAGGAATTCAAAAAGCGTACCCATTTGAATCAGCACAAGCTGGTCCACACAGACCGCAGCAGAGACTTCTCCTGCCACATCTGTGGCAAAATGTTCTTCATGAAGGGAACATTGAGCACCCACATACTGACACATGAAAACGTCAAACCTTACAAGTGTGAATTTTGTCCGATGGCATTTAAAGCAAAAGGAAACCTCCAATCCCACATCACATTGCATTCCGGAACAAAGCCATTTGTCTGCGAGCAGTGCGGGAAGAGCTTTAGAGTCAAAAGGCATCTGAAATCACATTCCATAATACATACAGACTTAATGCCttacaaatgtgaatattGTGACAAaacttttagatttaaaaccCGTCTTAACTTACACCTGCGACAGCATACAGGTGCTAAACCTTACAATTGTCCTCAATGTCAAAGAGACTTTACAAATGGCTCTAACTACAAGAAGCATATGAAACGAAGGCATAATATTGACACAACATCAATATGGAAAAAGTATATCAGTGCAAATACAGCAACGGAAGAAAGCAAAGATACTGTTGCTGGCCAGACATGA
Protein Sequence
MTKVDKYCRLCAEPTEHLIYADEEAALNSKIAKKMLWINIDVSPSNMLPKSICYSCFDQLERTWIFLKNVREAQEKLYLLFPTINVHKAKSGKQSSEVANPVDMNWDDFQDVKVDIKDEDIITVISTNKFIEGLENLKREQCPENDQDFVTEDNGFSSSTDSDEPSLVTVKKNKSKKRVSQQEDDKIYIEPVDIADLDVTWEEEACRCAHCDAQCKNISLLRLHSQHIHNSCCVFKCVSCGKVVSNFKSFVKHLRLHKHMLNYCCEFCDKKFTMTKFIKRHKHVEHGGGNLTCCRKCGTSFDTVEQLHDHLEKYSKSIKKMFRKAVDKTDEQDLKCNLCHKEFKKRTHLNQHKLVHTDRSRDFSCHICGKMFFMKGTLSTHILTHENVKPYKCEFCPMAFKAKGNLQSHITLHSGTKPFVCEQCGKSFRVKRHLKSHSIIHTDLMPYKCEYCDKTFRFKTRLNLHLRQHTGAKPYNCPQCQRDFTNGSNYKKHMKRRHNIDTTSIWKKYISANTATEESKDTVAGQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01139155;
90% Identity
iTF_01149036; iTF_01145455;
80% Identity
-