Ppol005810.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:326067-330149[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00035 0.018 14.9 2.3 1 23 66 89 66 89 0.95 2 10 0.00033 0.017 15.0 2.7 2 23 97 119 96 119 0.94 3 10 0.37 19 5.4 5.7 2 23 127 149 126 149 0.95 4 10 5.3e-06 0.00027 20.7 0.8 2 23 157 179 156 179 0.95 5 10 0.0011 0.058 13.3 4.7 1 23 186 209 186 209 0.93 6 10 0.00086 0.045 13.7 6.4 1 23 215 238 215 238 0.95 7 10 2.8e-05 0.0014 18.4 0.3 2 23 246 267 245 267 0.97 8 10 0.0012 0.064 13.2 2.3 2 23 275 297 274 297 0.96 9 10 5.7e-05 0.003 17.4 3.5 2 23 304 326 303 326 0.94 10 10 3e-05 0.0015 18.3 4.1 1 23 336 358 336 358 0.98
Sequence Information
- Coding Sequence
- ATGGATGgatcaataaaaatagaagTTGAGAAGCATGAGGAGGGCGAGGAAACAGCATCAGTCTCCCCAGCGCCCTCTGGACCTCTCAAATTCATCAGTGTAACTAGTTCCATACTCACGGAAGAACAACGGGAGATGTACGAATCAGTCCTCTCAACATGGAAGCCAGTGATGTTTCCAAAGCGCATGAAACAATACATCTGCCAGAAGTGTAGTAAGGAATTCAAAAACTACCAAAATCTGTACCTCCATACAACGAGAGTACACTCATCAGAAGAATCAGCAGTTATGTGCGATATTTGTGTCAAAACgttcaaaaataaacactacCTATATATGCATAGAATGAACAAACATTACTCGGAATCAGAGAAATGTTACTGTCAATTCTGCTTCCAAGAATATCGTACACGAAGGGCTTTACACATGCATGTGAAGCGCGTCCATCCGAACACTTTACCTGAAATAAAGTGTCCGGAATGCGGGAAAGAATTCAGCGTCCCATACAAACTGAGATATCACATTGATAGATGTCACAGAGAAGATAAggacaaatttaaatgtccTATTTGcgagaaattatataaaagccACCTGAATTTGAACAGACATTTACATTTCCAGCACTCACAAGTTGAACGACATCAATGTGTGTTCTGTCCGATGACATTTAAGTCTCGTCATCACATGAaaagacatattttaaatatccacCCACCATTAGAATCAAAAGTACAATGTCCGGAGTGTCTTAAAGAGTTCAAAAACGACCAATATCTAAAAGAACATATGCAAGTGCACACATCATTTGAGAAGAAAGTAAAATGCGACCAGTGTGATAAATATTTCCACTCCGCAGTCCGTCTGAAGAAGCATAAAAAGATAGTACATCCCGATAAACCGAAGTTACGCTGCGAAAAATGTGACAAGGAGTTCGCGCATGCGCATTATCTAAAAAGACACAATAACTCCGTACATCTAGAGCTTGATGAGACGAAGTACGAACACGAGTGTCCGCAATGCAACAAGAGATTCAAAATTAAGAGGTATTTGAACAATCACTTGCAGCGACATGAACAACAACATTTGAAAAGAATATCGCAAATGGTGAAAACGGTTATGGGTGATGAACGTAAGCCTGGTGCTGCACCAGCAAAGAGACGAGGAAGACCAAGGAAAGTTCATAAGGAATTTGAATTTATCAAATGCGAACCTGTGACTAGTTCTGAATCGGAATCCGAGGAGACTGAATCAGAGTCAGAGTGA
- Protein Sequence
- MDGSIKIEVEKHEEGEETASVSPAPSGPLKFISVTSSILTEEQREMYESVLSTWKPVMFPKRMKQYICQKCSKEFKNYQNLYLHTTRVHSSEESAVMCDICVKTFKNKHYLYMHRMNKHYSESEKCYCQFCFQEYRTRRALHMHVKRVHPNTLPEIKCPECGKEFSVPYKLRYHIDRCHREDKDKFKCPICEKLYKSHLNLNRHLHFQHSQVERHQCVFCPMTFKSRHHMKRHILNIHPPLESKVQCPECLKEFKNDQYLKEHMQVHTSFEKKVKCDQCDKYFHSAVRLKKHKKIVHPDKPKLRCEKCDKEFAHAHYLKRHNNSVHLELDETKYEHECPQCNKRFKIKRYLNNHLQRHEQQHLKRISQMVKTVMGDERKPGAAPAKRRGRPRKVHKEFEFIKCEPVTSSESESEETESESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943106;
- 90% Identity
- iTF_01139136;
- 80% Identity
- -