Ppol006501.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:489628-501860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00034 0.018 14.9 1.1 1 23 218 240 218 240 0.98 2 12 0.00032 0.016 15.1 0.2 1 23 247 270 247 270 0.90 3 12 7.8 4e+02 1.2 6.7 1 23 274 296 274 296 0.96 4 12 6.7e-05 0.0035 17.2 1.4 1 23 301 324 301 324 0.98 5 12 0.14 7 6.8 1.4 1 23 327 350 327 350 0.95 6 12 0.94 49 4.1 0.6 3 22 368 387 367 393 0.92 7 12 0.2 10 6.2 0.1 2 23 398 418 397 419 0.93 8 12 0.00064 0.033 14.1 1.0 2 23 438 460 437 460 0.96 9 12 1.8e-05 0.00095 18.9 0.8 2 23 470 491 469 491 0.96 10 12 0.00041 0.021 14.7 0.0 1 23 497 519 497 519 0.98 11 12 1.6e-07 8.3e-06 25.4 2.3 1 23 525 547 525 547 0.98 12 12 1.2e-06 6.4e-05 22.6 4.2 1 23 553 576 553 576 0.98
Sequence Information
- Coding Sequence
- ATGTTGACTACCGACATCTGtagaatatgtttaaataaaaatgttcccATGTTTATACTGAATAATACTTTACAAAACTTATTCGAAACACTAATAAATGGATATATACGTTCCGATGTTAAGCCGGTATTggcttgttttatttgttttgcgAAATTGAAGAGATGTAGAAGATTACAACTGCAAGCAATAAAGTCCAACGAACTTTTAAACAAGATATCTGTTGATGGAAATGAGCTTCCCGAGTTAATTGATACTCAGAGAGTTAATCAAGATTATCTTCAATTCACACCTATTTATCATATACATttagaagaaataaatatagaggataaACCAAAGATTGATGTTATACCAACATtggttaaaaatgaaatagagAATGTATTAGAAGATCGAATAGATCAGGaCTCGGCTAcggaattaaattttgatacaTTCCAAAATACAGTAAGTGACTCCGAAGATGATATTCCTCTCATTGCTATTggtaataaaaagataaaagagacgccaaaaataaataaaaaacgacaAAAGAGAGATAACAAAGattttaaagtgGACGCAAAGGAAATAGATTTGACAGAAGAGGAGCAAAGACAGGAATTATTACAAAGAGCGAGTtcagataattatttaaattctccATACAAATGTGAGAAATGCTACAAAGGTTTTGTGGACCCTCAAGCATTTAGTAATCATAAAGAGAAACATGATAAGcGCAGCGGTCCTTACGAATGTACAATATGTCAACTTAGATATACAAGTGCAAGGCAGCTCCGAGCTCATTCGGTGTCAGCGCACTCGCGGCGATACTCGTGCAGTAAATGCCCGCATCGATCACATACTAGaCATCAAGCCAAAGATCATGAAAAATGGCATAACGGGTTTACATACCCTTGTCGTGTATGCGGACAGAAATTCCAgaaACCGACGTCTTTTTTAACGCATATGCGTAAAAATCATTCGGAACACGTATGTGTTAGATGTGGAGATAGTTTTGTAGGAAAACATGGACTTTTGATGCATTTAAGTAAAACACATAAACGGGATGAGGAAAAAGATAACTCAGAAGTAACAGCTATGAAGAGATTCTGTTCCGAATGTAATATACAATTTCTCAATTTAAACGCATGGAAGAAACATATATTAACATCTTTCAAACATATGAGGAATGGAAACAGTATGTGTGATATTTGCGGGGTGTCGGTGACGTCAGAGAGCCGCGGCTCGCACATGCGCAGTCATATGAGGGAGCTTCGCCCTCCGGCCGCAGCGCCCGCGGAAGCCTCCACCCCTACGCTACGTTGTTCACagTGTGAGAGTCAATTTACATCGCGTTCAAGACTACAAGCGCACGTGAGACGAGTTCACCTCGGACTGAAGTATGACAAGAACGTGGTCTGCGAAATGTGCGGGAAGAAATGCACCtCGGCGGCCAGTCTGCGCTACCACCAGCGCGCGCACACCGGCGAGCGGCCGTACGCGTGTGCGCTCTGCCCCGCCTCATTCGCGCAGCGCGCGCCGCTGCGGGTGCACGCGCGCACGCACTCCGGCGAGCGGCCGTACGCCTGCCACACGTGCGGCAAGCGCTTCACGCAGAAACCCGCCCTCAATAGACATTACAGAGTACATTCAGGTGCGAGGCCGTACTCTTGTACACAATGTACTAAATGTTTCAGTCAATCTAATTCATTGAAGTTGCATATACGAACAGTACATTTGAAGCTGCCGCTCAGGAAGAAAGAAAAccagcaataa
- Protein Sequence
- MLTTDICRICLNKNVPMFILNNTLQNLFETLINGYIRSDVKPVLACFICFAKLKRCRRLQLQAIKSNELLNKISVDGNELPELIDTQRVNQDYLQFTPIYHIHLEEINIEDKPKIDVIPTLVKNEIENVLEDRIDQDSATELNFDTFQNTVSDSEDDIPLIAIGNKKIKETPKINKKRQKRDNKDFKVDAKEIDLTEEEQRQELLQRASSDNYLNSPYKCEKCYKGFVDPQAFSNHKEKHDKRSGPYECTICQLRYTSARQLRAHSVSAHSRRYSCSKCPHRSHTRHQAKDHEKWHNGFTYPCRVCGQKFQKPTSFLTHMRKNHSEHVCVRCGDSFVGKHGLLMHLSKTHKRDEEKDNSEVTAMKRFCSECNIQFLNLNAWKKHILTSFKHMRNGNSMCDICGVSVTSESRGSHMRSHMRELRPPAAAPAEASTPTLRCSQCESQFTSRSRLQAHVRRVHLGLKYDKNVVCEMCGKKCTSAASLRYHQRAHTGERPYACALCPASFAQRAPLRVHARTHSGERPYACHTCGKRFTQKPALNRHYRVHSGARPYSCTQCTKCFSQSNSLKLHIRTVHLKLPLRKKENQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149066;
- 90% Identity
- -
- 80% Identity
- -