Ppol006532.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:937924-959989[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0021 0.11 12.5 0.1 1 23 184 207 184 207 0.94 2 11 0.0003 0.015 15.1 3.8 1 23 214 236 214 236 0.99 3 11 0.00012 0.0062 16.4 0.9 1 23 240 263 240 263 0.97 4 11 5.8e-05 0.003 17.4 1.1 1 23 296 318 296 318 0.98 5 11 5e-05 0.0026 17.6 2.1 2 22 329 349 329 353 0.93 6 11 3e-05 0.0016 18.3 0.2 1 23 392 414 392 414 0.98 7 11 0.0014 0.075 13.0 0.4 3 22 424 443 422 447 0.90 8 11 2.4e-05 0.0013 18.6 0.3 1 23 455 478 455 478 0.91 9 11 0.0012 0.06 13.3 5.7 1 23 484 507 484 507 0.95 10 11 0.00018 0.0095 15.8 2.5 3 23 516 537 514 537 0.89 11 11 0.24 12 6.0 4.3 1 23 543 566 543 566 0.98
Sequence Information
- Coding Sequence
- ATGGAGATTACTGACTGCGTTTTGTGTGTAGGATGTCTTTGTGTTGGTcgaaaaatgttaatactCGAAGACTATTGGAAGAAGAAATGTTTCTTACAAATTCTTAGTGAAATACCGgtATTGCAGAATGAAAGTATACCAATGTCTCTGTGCTGGGAGTGTGATGCAATCATATCTCGCTTTACGAAATTCCAACGACAAGTTATTGATTCCTTTGAAGTATTTCAGAATTATTTGAAACagaATACAGATCTATCACAAATAAGGACGACATCAAGATTAGAAACacacaaaataattgatataatAATACCTGATGATTTGGTTGATATCAAAGTGGAAAAAGTATGGGATGTTGGAATAGATCAAATCAAAACTGAAGATTGTTCAGAGAATACTGACGATAGAGAGTTAGAAATCAAAAGGAAGAAATCACGTAAATTgaataagaaatgtaataaagtgtaCAAGGAGATAGAGTTAAGTGCAGAAGAGTTGGATGTAGAAAGAAGAGTGTTGTTGTGTAAAGAAGAATATATCAATGCGGTGTTCAAATGTGATAATTGTATAACAGTGTTTCCGAATGCAGATGATTTACAAGATCACATATATTTGAAACATGAAGtgAATGCatcgaaatttaaatgcgatgtTTGTAAATGTTCCTTCTCGACTGAAGTATCGTATAATTACCATATAAATAGACATAAGAGGAGGTTTAAGTGTCAGTTATGTGagaaaaattttataagtaaaacagCAGTCACAAAGCACTACAATATTGTACACAGTGTAGATTATAATTGTCAAATGGAAAGTAAATTGAATGATGACCAGGAAGTGATTgttgaagaaattcaaaataacagTACAGAACAACCTTGTTTCCCTTGTGAACTTTGTGAGAAAACATTTCGATGGAAGACGTCTTTACGGAAACATTTAGAAACGCATCGTATTGAAACGGGACAGAAAAGGAAGCCATATTGTGAAACGTGCAGATTGTCTTTCACTACAACGtctaatttacaaaaacatataaaaaccaGTTCGAAACATCAGATATTGCTGAAAGTCagGAACTTAAAAGATTTACCTCTAGAAGAGAATCCGGAGAAGAAAAAGGACAGAATAGAAGAGATAAAAGCATCAGTTAATAAGCAGAGGGAGACATTCCCCTGTCCACAGTGTGATAAGAAATTTCAATGGAGAGGAAATTTAGCGAGGCATATGGAAAGTCATACTGCTAGagCAAAGGGCGATTTAATCTGCGAGCCGTGTAATAGAACATTCTCGTCTAAAGCAACGTACGAACAGCATATGAAAGTCAGCATGCGACATGTCTCTGAGAATGATTTCAAATACATGTGCAGTGAATGCGGCAAACGGTTTGCGAACAAAACTCGACTACGTGACCACGTGGATTGGGATCATTTGAAGAACTACGTACATAAATGTACTGAATGTCAGAAGGTATTCAAGAGTCATACGTCTCTGTATCTCCATAAACAGAATGTCCATGAGAAAGATCAGGCCGGTCATCTCTGCCATCACTGCGGGAAAGCGTTTCCGAATCAGGCGAAGCTCCGCGGCCACGTGTCGGGGCTGCACGCGCGCGAAGCCCCATACAAGTGTGTCTCGTGCAGCGCGCGCTTCAGCTGGCACTCCTGTTTGTCCAGACATGTGCGAAGAGTACACCGTAAAAGGGACACgtaa
- Protein Sequence
- MEITDCVLCVGCLCVGRKMLILEDYWKKKCFLQILSEIPVLQNESIPMSLCWECDAIISRFTKFQRQVIDSFEVFQNYLKQNTDLSQIRTTSRLETHKIIDIIIPDDLVDIKVEKVWDVGIDQIKTEDCSENTDDRELEIKRKKSRKLNKKCNKVYKEIELSAEELDVERRVLLCKEEYINAVFKCDNCITVFPNADDLQDHIYLKHEVNASKFKCDVCKCSFSTEVSYNYHINRHKRRFKCQLCEKNFISKTAVTKHYNIVHSVDYNCQMESKLNDDQEVIVEEIQNNSTEQPCFPCELCEKTFRWKTSLRKHLETHRIETGQKRKPYCETCRLSFTTTSNLQKHIKTSSKHQILLKVRNLKDLPLEENPEKKKDRIEEIKASVNKQRETFPCPQCDKKFQWRGNLARHMESHTARAKGDLICEPCNRTFSSKATYEQHMKVSMRHVSENDFKYMCSECGKRFANKTRLRDHVDWDHLKNYVHKCTECQKVFKSHTSLYLHKQNVHEKDQAGHLCHHCGKAFPNQAKLRGHVSGLHAREAPYKCVSCSARFSWHSCLSRHVRRVHRKRDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149027; iTF_01149805;
- 90% Identity
- iTF_01149027;
- 80% Identity
- -