Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:1042299-1046131[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.58 30 4.8 2.5 5 23 339 357 338 357 0.95

2 11 0.011 0.56 10.2 0.2 3 23 365 385 363 385 0.93

3 11 0.73 38 4.5 0.6 2 23 393 414 392 414 0.88

4 11 5.7e-07 3e-05 23.7 3.6 2 23 419 440 419 440 0.98

5 11 0.019 1 9.4 3.1 1 23 446 468 446 468 0.97

6 11 6e-05 0.0031 17.3 0.6 1 20 472 491 472 492 0.96

7 11 8.2e-05 0.0042 16.9 0.2 1 23 526 549 526 549 0.96

8 11 4e-06 0.00021 21.0 0.5 1 23 571 593 571 593 0.98

9 11 1.1e-05 0.00058 19.6 3.4 1 23 599 621 599 621 0.98

10 11 0.0038 0.2 11.6 0.2 3 23 629 649 627 649 0.98

11 11 7.6e-06 0.0004 20.1 0.7 1 23 655 678 655 678 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.58	30	4.8	2.5	5	23	339	357	338	357	0.95
2	11	0.011	0.56	10.2	0.2	3	23	365	385	363	385	0.93
3	11	0.73	38	4.5	0.6	2	23	393	414	392	414	0.88
4	11	5.7e-07	3e-05	23.7	3.6	2	23	419	440	419	440	0.98
5	11	0.019	1	9.4	3.1	1	23	446	468	446	468	0.97
6	11	6e-05	0.0031	17.3	0.6	1	20	472	491	472	492	0.96
7	11	8.2e-05	0.0042	16.9	0.2	1	23	526	549	526	549	0.96
8	11	4e-06	0.00021	21.0	0.5	1	23	571	593	571	593	0.98
9	11	1.1e-05	0.00058	19.6	3.4	1	23	599	621	599	621	0.98
10	11	0.0038	0.2	11.6	0.2	3	23	629	649	627	649	0.98
11	11	7.6e-06	0.0004	20.1	0.7	1	23	655	678	655	678	0.96

Sequence Information

Coding Sequence: ATGAAGTGTTCTAAAATGGAAGCTTGGGCAAATTTGTGTCGTTGCTGCCTGTCTCCCAATTCCGGCGTGCCATTGATAGATTCTGCACAAAACGCAAATAACAAGTTTCTAGAAGTCACATCCCTAGAGGTTAAACAAGACGATGGGCTACCACAGAAACTCTGCGAGGATTGCTACTCCATTTTAAACTCTGCATATCATTTCCGTAAACAATGTTTGAAGATGGACAAAGAGTTACGATACCAACTAGATTTGCTGAAGGCAGAGGAAGAAGGAGTAAGAcataaaaagaagaagaaaaagagTGCAGTTGACGTTGATGATGAAACCCTGAAACAATTGGAGGGTATTATTAAATCGGAACCAATagatgttgatgatgatgactatTATTACGTATTAGTAATAGATGAAGAGAAGAAGAAATCTCAAGAGAATCAAGATGTagcagataaaataaaaatagaactaGTGAATGAAACAGAAAATGAAGTGAATGAACAAACTGAAAGCCAAGACAGTCACTTCGATGAGtcttttgatacatttttgttaagtaACTCAAAAGTATCTGATAAAGTTCCCGCAACTATATTAGAGAATGAAGAAATCCAAGAGAATGAATACGAAAGTATGGATGTTGAAACTGAAAATGCAACAGAGATGATACCGCATTTAATACAAACTCAAGACGAAATCGATTCAAATGAGGATTCACAAACTATTATGGAACAGATATCAAGtaatacgaatattataaaaattctaaccAATTCGGGAAATGAAAGAACATTGATggttaaaaatgataatgtgAAATATTCATCAGATCAACAGTATATTACGATTGAAGGTGATGAAGTTACATCACAGGAGGAGGTGATACTGTGTGAAGGTGATGATGCCACGCAGTACAAGTTCCTGAACTGTGACAGTAACAGTATGGTGATAGAGTATGATGAGGACAGTGAGTTCACAACGGTGATGCAACAAGAAGATGGGACATTTATATGTGAATGCGGTGAACATTTTCAAGATTTGATCGAATATCAGAAACATCAACACCAACACAATCCCGGTGGTGAACATTTATGTAATCTATGTGGGAAAGGATTTGAGACATCGGAGATTTTAGTTGGGCATATGTTATTACACAGTGTGACTGGCCCTTTAGTGACATGTCCGTTTTGTAAGCAATTAATTCGTCGCAACTCTTTGACGcaacatattaaatatgtgCATAATAATAAACCTCGTTGCACGATTTGCTTCAAAACGTTCGCGAATCAACATAACCTCAAACGTCATATGATGATACACAACGATATAAGAGAATTTGAATGTGACATTTGTTTGAGAAGATTCCATCAGAAAATAACAATGCAAACACATAGGTTAAATCATTTGAACGCATTTTCATGTAATCAATGCGATATGAcgtttaaaagtaaagaagCGTTAACAACGCATCGTGATTTCGACGAAtgcaataaaagtaaagtgATCCAAGCTAAGGaagaattaatgaaaacaGTCAAACAGGAAATCAAGACTAGTGTAGGCAAAGTTTTAGGATATGCTTGTTCGTTGTGcaagaaaatgttttctttagagTCAGCATTAGAACAACATATAGAGAGTACTCATATAGTTGAGAGTAGTGAGTTTACTGAGGCACAGAAAATAATGCGGAATAAAAGTATAAAGAGATTTGAATGCAGTATTTGTGGTAAAAGTTGTGCGAGTCAAGCAATGCTGACAATGCACGAACGTGTTCATACAAATGAGAGGCCATTCCCTTGTCAATTATGTCCGTTgagatttaaaactaaaacacatCTGCGGACACATCAATTGACACATACAAGGGAAAAGAAATTCGGATGTTCTGTGTGTATGAAATATTTCGCCTTAAAAGGTAATTTGGTTGTACATTTGCGCACACATACTGGAGAAAGGCCATACGTTTGTTCTATTTGTGGTGAAGGATTTATTGATTCGAAATATCTTAAGAAACATAAACTTAAGAAGCATTCGAATGACAGTGTTGCGTATATAGCCTAG
Protein Sequence: MKCSKMEAWANLCRCCLSPNSGVPLIDSAQNANNKFLEVTSLEVKQDDGLPQKLCEDCYSILNSAYHFRKQCLKMDKELRYQLDLLKAEEEGVRHKKKKKKSAVDVDDETLKQLEGIIKSEPIDVDDDDYYYVLVIDEEKKKSQENQDVADKIKIELVNETENEVNEQTESQDSHFDESFDTFLLSNSKVSDKVPATILENEEIQENEYESMDVETENATEMIPHLIQTQDEIDSNEDSQTIMEQISSNTNIIKILTNSGNERTLMVKNDNVKYSSDQQYITIEGDEVTSQEEVILCEGDDATQYKFLNCDSNSMVIEYDEDSEFTTVMQQEDGTFICECGEHFQDLIEYQKHQHQHNPGGEHLCNLCGKGFETSEILVGHMLLHSVTGPLVTCPFCKQLIRRNSLTQHIKYVHNNKPRCTICFKTFANQHNLKRHMMIHNDIREFECDICLRRFHQKITMQTHRLNHLNAFSCNQCDMTFKSKEALTTHRDFDECNKSKVIQAKEELMKTVKQEIKTSVGKVLGYACSLCKKMFSLESALEQHIESTHIVESSEFTEAQKIMRNKSIKRFECSICGKSCASQAMLTMHERVHTNERPFPCQLCPLRFKTKTHLRTHQLTHTREKKFGCSVCMKYFALKGNLVVHLRTHTGERPYVCSICGEGFIDSKYLKKHKLKKHSNDSVAYIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01144022;
90% Identity: iTF_01144022;
80% Identity: -