Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:1511215-1518118[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0014 0.073 13.0 4.3 2 21 190 209 189 210 0.95

2 12 0.037 1.9 8.5 2.4 3 23 248 268 246 268 0.96

3 12 4.6 2.4e+02 2.0 0.4 2 23 275 296 274 296 0.93

4 12 1.5 76 3.5 0.4 3 12 310 319 309 331 0.80

5 12 0.0005 0.026 14.4 1.0 3 23 339 359 338 359 0.98

6 12 0.12 6.1 7.0 0.1 1 23 364 386 364 386 0.95

7 12 4.2e-07 2.2e-05 24.1 1.1 3 23 394 415 393 415 0.97

8 12 6.4e-07 3.3e-05 23.5 0.8 2 21 421 440 420 441 0.95

9 12 0.0034 0.18 11.8 1.9 1 23 448 470 448 470 0.95

10 12 1.4e-06 7.3e-05 22.5 1.7 1 23 476 498 476 498 0.98

11 12 1.4e-06 7.1e-05 22.5 2.6 1 23 504 526 504 526 0.98

12 12 3e-05 0.0015 18.3 3.7 1 23 532 555 532 555 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0014	0.073	13.0	4.3	2	21	190	209	189	210	0.95
2	12	0.037	1.9	8.5	2.4	3	23	248	268	246	268	0.96
3	12	4.6	2.4e+02	2.0	0.4	2	23	275	296	274	296	0.93
4	12	1.5	76	3.5	0.4	3	12	310	319	309	331	0.80
5	12	0.0005	0.026	14.4	1.0	3	23	339	359	338	359	0.98
6	12	0.12	6.1	7.0	0.1	1	23	364	386	364	386	0.95
7	12	4.2e-07	2.2e-05	24.1	1.1	3	23	394	415	393	415	0.97
8	12	6.4e-07	3.3e-05	23.5	0.8	2	21	421	440	420	441	0.95
9	12	0.0034	0.18	11.8	1.9	1	23	448	470	448	470	0.95
10	12	1.4e-06	7.3e-05	22.5	1.7	1	23	476	498	476	498	0.98
11	12	1.4e-06	7.1e-05	22.5	2.6	1	23	504	526	504	526	0.98
12	12	3e-05	0.0015	18.3	3.7	1	23	532	555	532	555	0.96

Sequence Information

Coding Sequence: atGCTTGCAaatcttgtaataaataaaccgATCAACGAAAATGCTTGTCGGGCGTGCTTACAAACTAAACATGAAGGGTGTGTATCtcttaaaaacaatagtgaaCTGTCCCAACTTTTTGAGTTTTGTGTTGGATTAtcaGTAGAACGGGAGGACATTTCACAAGTTTTGTGCCAGCAATGTGCAACAATTGTCAAAAAATTTGCAGATTTCAAAGTACAATGTCACACATAtgatgaaatgtttaaatctatAGCAAAGAATAAAGATaaTATTTGTACAGAAAAGTTTTCAACAATTGAAGAAGTGAATGTTGACAGTAATTGTGAATTAGACAATATAAGTTTTGAAGATGAATTTTCAAAtgataatatagaaataaatgaaaattgtaatacaaaagATATGAAACAAAATTCACAAAGTGTTAGAAAAGTCATTGAAATACCCAGGAGAAAATCTTCTAGacaaaaattttgtaaaaatggtactccaaagataatttttgaggaaaatgaaaatgttggTAATATTGAACAATGTGAAAAAGgtctaataaaagttttagaaTGTACCAAATGTAAGAAACAATATAaaagaaCTAAATGTCTTATAAAACATATGAGGCAAACATGTTACAagcataaaaatatcaaaaacgCAGTTGTAACTGAAAAATATAAGCAGCAAACAATTAAGGAAAAGGATGAAAAAACGAAGAAATACTCTAATGAACTATTTTGTGGTCTATGTCATTTTTCATCATCTCATCGTGAAGATCTGGTGATACATTTAAATCAACATTGGGATATCAGTGATTTGCACTGTAAACTATGCAGCTTTGTGGGCCAGGACCTCGCAGAATTGTTTggacatagATCAGTTCATCAACCGTACGTGTTTTTATCAAAACcactaaataaaaactgccatatttgcaataaaagtGCATCAAATATCAAGGTTCAGCAGTTCCACTACAGATCGGTGCATTTAAACAAAGATGGCGGACTTTGTTCTGTTTGTCAGAAAACTTTCCGATCGTACACAGCGTGGAGAAATCATGAGAGACTTCATAAAGAAGGCAAATATATCTGCGACCTTTGTGGGAATAAATTTCTATTTAGGAGTATGATTGAGGCCCATATGGCAGAACATGCAAATATAAGAGATAATATTTGCCATATATGCGGAAAGGCTTTTAAACGAGCATCGTATTTAAAGGTACACTTTAACACAGTGCATATAAAAGAACCAGTGAAGTGTACACATTGCGGTAAAACATTCAAATCGCCAGCGTCCTTGAAGGACCATTTGAGATACGTAAATCGAGAGAAAAAATTCCAATGCGATGtttgctttaaatattttgcatctGAACTTTCACTGAAAAAGCATAAGTTCTGGCATACTGAGATGCGACCTTTTAGTTGCAAAGATTGTGGTATAAAATACAAAGCGAAATCGTATTTGAAAATACATATGAGAAAACATACGGGACAGAGACCATACACTTGTAATCAATGTGATAAATGCTTCCCAACTTCAATGCAATTAAAACGACATGGAATGGTCCATAGTGGAGACCGACCATATAAATGTAGCAATTGCAACCGATCGTTTTATTACAAGAAACAATTATTACgacatgtaaatttaaaacacaaagatGAAGGAAAATCGGAAAccaatcaattttaa
Protein Sequence: MLANLVINKPINENACRACLQTKHEGCVSLKNNSELSQLFEFCVGLSVEREDISQVLCQQCATIVKKFADFKVQCHTYDEMFKSIAKNKDNICTEKFSTIEEVNVDSNCELDNISFEDEFSNDNIEINENCNTKDMKQNSQSVRKVIEIPRRKSSRQKFCKNGTPKIIFEENENVGNIEQCEKGLIKVLECTKCKKQYKRTKCLIKHMRQTCYKHKNIKNAVVTEKYKQQTIKEKDEKTKKYSNELFCGLCHFSSSHREDLVIHLNQHWDISDLHCKLCSFVGQDLAELFGHRSVHQPYVFLSKPLNKNCHICNKSASNIKVQQFHYRSVHLNKDGGLCSVCQKTFRSYTAWRNHERLHKEGKYICDLCGNKFLFRSMIEAHMAEHANIRDNICHICGKAFKRASYLKVHFNTVHIKEPVKCTHCGKTFKSPASLKDHLRYVNREKKFQCDVCFKYFASELSLKKHKFWHTEMRPFSCKDCGIKYKAKSYLKIHMRKHTGQRPYTCNQCDKCFPTSMQLKRHGMVHSGDRPYKCSNCNRSFYYKKQLLRHVNLKHKDEGKSETNQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -