Basic Information

Insect: Papilio polytes
Gene Symbol: su(Hw)
Assembly: GCA_000836215.1
Location: NW:1019319-1025805[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.085 4.4 7.4 0.3 1 20 29 48 29 50 0.88

2 13 0.0016 0.085 12.8 0.4 2 23 67 89 66 89 0.94

3 13 0.026 1.3 9.0 2.0 2 23 97 119 96 119 0.94

4 13 1.8e-05 0.00095 18.9 2.1 1 21 124 144 124 145 0.95

5 13 1.2e-06 6e-05 22.7 2.1 1 23 155 178 155 178 0.97

6 13 0.007 0.36 10.8 3.6 1 23 184 207 184 207 0.97

7 13 6e-05 0.0031 17.3 0.4 1 23 214 236 214 236 0.97

8 13 0.00019 0.0098 15.8 0.2 1 23 241 263 241 263 0.98

9 13 0.00012 0.0063 16.4 1.3 1 23 269 291 269 291 0.98

10 13 0.0092 0.48 10.5 0.1 1 23 294 316 294 316 0.97

11 13 0.037 1.9 8.5 0.9 3 23 324 349 322 349 0.86

12 13 4.5e-05 0.0024 17.7 4.1 1 23 355 377 355 377 0.98

13 13 1.1 58 3.9 0.1 3 23 385 408 384 408 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.085	4.4	7.4	0.3	1	20	29	48	29	50	0.88
2	13	0.0016	0.085	12.8	0.4	2	23	67	89	66	89	0.94
3	13	0.026	1.3	9.0	2.0	2	23	97	119	96	119	0.94
4	13	1.8e-05	0.00095	18.9	2.1	1	21	124	144	124	145	0.95
5	13	1.2e-06	6e-05	22.7	2.1	1	23	155	178	155	178	0.97
6	13	0.007	0.36	10.8	3.6	1	23	184	207	184	207	0.97
7	13	6e-05	0.0031	17.3	0.4	1	23	214	236	214	236	0.97
8	13	0.00019	0.0098	15.8	0.2	1	23	241	263	241	263	0.98
9	13	0.00012	0.0063	16.4	1.3	1	23	269	291	269	291	0.98
10	13	0.0092	0.48	10.5	0.1	1	23	294	316	294	316	0.97
11	13	0.037	1.9	8.5	0.9	3	23	324	349	322	349	0.86
12	13	4.5e-05	0.0024	17.7	4.1	1	23	355	377	355	377	0.98
13	13	1.1	58	3.9	0.1	3	23	385	408	384	408	0.83

Sequence Information

Coding Sequence: ATGCCTCCTAAGCGTAAAAAAGTTGGGCGGCCCAAAGGTTCCAAAAACAAAAAGTCTCTCAATGGTAAGGTGTCAAAAAAGAATTTCACCTGTGGACTTTGCAAACAAAAGTTTACTTCTGAAGCAAAGGTATCTGAACACGGCAAAATGTGCAAAAACGCACTAGTACTGAACGCAGATGTTATTAagacTACAATCAAATGTGCTGAGTGTAACAAGAGGTTTGCATTTGAAGAGACATACAAATCGCATTTAGAAAATGATCATTCCAAAACACCAGGTAGCATAACATGCGACTTGTGTCCTGTATCTTGTCCTGACAAGAAAGTATTATCAAAGCATATGCATAACTATCATGGAAGAGATATGTTTATGTGTCCGCACTGTGATAAATTGTTCACAAGACAAACTCATGTTATGCGACACATGTCTCAGAAGGGATGCGGAGGACAAATCTCCCTGTATACATGTGAAATCTGTCACAGCTCATTTACAAGAAAAGACAATTTAATGGTGCATTTAAGGTTGCAGCACATTGCCAGTAACCAttttacatgtaaacaatgtcCATACCATACTAAAAACTTCTCTAAATTGATCATTCATTGGATGCGATTTCACACagAAAAACCTCTGAATTTCGAATGTGACCACTGCGGAAAGACAACAAGGTCAAGAGCAGCGATTGCAAAGCATTTAGAAATACATGGTTTGAAGAAATTTCGCTGCGACGTgTGCGGGTATGCGACGTTCACTTTGGAGGTGCTGCGGCGTCACATCCTGACGCACGTGGAGGACAAGCCGCACAAGTGCgcggtgtgcgcgcgctcctACATACAGCGCATACAGCTGCAGAAGCACATGGAGAGACACTACGGCTTCATATGCGGACAGTGCGGGTACAACGCTAACACCAAAGCTGGatTATTGATTCACAAAAGAGAACATTTGGATTTGAAGAAATTGTCGTGCCACTTTGAAGGATGTCCGTATTCTAAAAAGGAGTTTAAAGATGAAGTCAGCCTCAGAAAACACATTAAGGATCATGTTGATAATAAACCGTATTCGTGCGAGGTGTGCGGCAAGTGTTTCCACAGCGAGGCGTACATGCGCAAGCACGTGCAGACGCACACGCTGGAGCGGCCGCGGCGCTGCATGTACTGCGTGGCGGCGCGCGCCTACGTGCGCGGCGAGCAGCTGCTGCGCCACGTGCGCATGCAGCACAGGCACATCTTCCGCGACCACCTCACGCACGTGCGACAAGTGCTGGGGCTGAACGTGGGCACGGAGAGGGTAACGAAGTCTGAGCTGGAGGCGATCCTGAACGTGCTGGACGCGGAGTCGGAGCGCATCATCGAGGGCTACGGCACCGGCGTGCTGTACGGCGGCATGCTCGAGGTCGACTCCGACAACGCCAACGACACCAACAAAAATACCAGCGAAAACAGTCCGTTGATGTCAGAAGAAGAGCTTGCAGAGAGTCTTAAAAAATTGCTGACTCAACTTATCGATAAAGACACGTTGGATGTTTTTGGATGGCCGGACGAGCCAGTAGATACGGTTTTAGAGAAAGTGATAGAGCAgtgcggcgcgcgcgcagctGACCGCGACAAATGGACGCGAGTGCAGCGGCTCAGAGAGAACGCCAAACACTTGTTCGTGTATGTGATCGACGACAAGAACATCGCACGAATGCTGCACACACACACCATAGACCAGATCATCAAGCACATCCTCGCGCAAGTCGGCACCATCGCCACCATAAATACTAATGCCAAAAAATAG
Protein Sequence: MPPKRKKVGRPKGSKNKKSLNGKVSKKNFTCGLCKQKFTSEAKVSEHGKMCKNALVLNADVIKTTIKCAECNKRFAFEETYKSHLENDHSKTPGSITCDLCPVSCPDKKVLSKHMHNYHGRDMFMCPHCDKLFTRQTHVMRHMSQKGCGGQISLYTCEICHSSFTRKDNLMVHLRLQHIASNHFTCKQCPYHTKNFSKLIIHWMRFHTEKPLNFECDHCGKTTRSRAAIAKHLEIHGLKKFRCDVCGYATFTLEVLRRHILTHVEDKPHKCAVCARSYIQRIQLQKHMERHYGFICGQCGYNANTKAGLLIHKREHLDLKKLSCHFEGCPYSKKEFKDEVSLRKHIKDHVDNKPYSCEVCGKCFHSEAYMRKHVQTHTLERPRRCMYCVAARAYVRGEQLLRHVRMQHRHIFRDHLTHVRQVLGLNVGTERVTKSELEAILNVLDAESERIIEGYGTGVLYGGMLEVDSDNANDTNKNTSENSPLMSEEELAESLKKLLTQLIDKDTLDVFGWPDEPVDTVLEKVIEQCGARAADRDKWTRVQRLRENAKHLFVYVIDDKNIARMLHTHTIDQIIKHILAQVGTIATINTNAKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01139711;
90% Identity: iTF_01144006; iTF_01142556; iTF_01141091; iTF_01149780;
80% Identity: -