Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:184402-189604[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0018 0.091 12.7 1.2 1 23 248 270 248 270 0.97

2 10 0.048 2.5 8.2 0.4 2 23 297 319 296 319 0.94

3 10 8.6e-05 0.0045 16.8 0.3 1 23 342 364 342 364 0.98

4 10 0.0001 0.0054 16.6 0.4 1 23 368 391 368 391 0.97

5 10 8.8e-06 0.00045 20.0 0.2 1 23 396 419 396 419 0.94

6 10 0.04 2.1 8.4 2.1 1 20 425 444 425 448 0.81

7 10 1.3e-07 6.8e-06 25.7 2.4 1 23 455 478 455 478 0.98

8 10 0.0051 0.27 11.2 5.1 1 23 484 506 484 506 0.97

9 10 2.2e-07 1.2e-05 25.0 1.7 1 23 512 534 512 534 0.99

10 10 2.9e-05 0.0015 18.3 1.8 1 23 540 562 540 563 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0018	0.091	12.7	1.2	1	23	248	270	248	270	0.97
2	10	0.048	2.5	8.2	0.4	2	23	297	319	296	319	0.94
3	10	8.6e-05	0.0045	16.8	0.3	1	23	342	364	342	364	0.98
4	10	0.0001	0.0054	16.6	0.4	1	23	368	391	368	391	0.97
5	10	8.8e-06	0.00045	20.0	0.2	1	23	396	419	396	419	0.94
6	10	0.04	2.1	8.4	2.1	1	20	425	444	425	448	0.81
7	10	1.3e-07	6.8e-06	25.7	2.4	1	23	455	478	455	478	0.98
8	10	0.0051	0.27	11.2	5.1	1	23	484	506	484	506	0.97
9	10	2.2e-07	1.2e-05	25.0	1.7	1	23	512	534	512	534	0.99
10	10	2.9e-05	0.0015	18.3	1.8	1	23	540	562	540	563	0.95

Sequence Information

Coding Sequence: atggaaaaaagATACGGCAAATGTCGATTTTGTGTAGAAAAAGGGGAGCATCAAGATCTTTTTACGGAATATTTGTCTAACGGCAATAAAGAAATCTATATGGACATCATTATGGATTGTTACAATATAtactTATCAACCAATACAACGCAGAGTTCCCTGATCTGTTCATCATGTGTAGAACACCTCAGGAATGCGAACAAATTCCGTATGATGATATTAGACTCGGAACAACaacttttaaatgcaattacaGATAAAgaaacagtttttataaatgttcCAGCAAGTTCTCATCCTTTAGAAGAGTTTGAAAGCATAAAGACAGAGGATATTATCGATGTGAAAATTGAGAATGAGGACCAGGAGTCTATGGATTTTGATTCAGAATATTTTGCGGATAATATTGAAGATATTTGTGatATTTCAACAAAAGATATAGAATCAGAGGTACTTTTAACTCCAGAAGCAGCGCTTATAGCCAGGTTCCCGAGGAATGAACTAAAACTACCAACACGACaatctttaaaaacaacatGCCCTGAATTCTTCAAACATCTCGAAATGTTAAAAGatAAAATAGTCTTACCTAGAATGATAGCAAAACTTCTAGAAACAGATCCATCTCCGgttaaaaaaaggaaactcTATATATCCGAGAAAATGGGTTATTTATTGAACGCAGCGTTATTACTAGAGAATAGTAACGCTACACCGTTCAAAAACAGAAATTGTTCCGGATTCCCGTGTTATTATTGtagaaaattatatgaaaatttggATAAATTACGTGAACACATAAAACAAcataagaaaaaagaaataaaaaagatactaTCAACTTTTGGTGCGGAATATTTCGTAGTTTACGTCGACGTTActgatttaaaatgtacaatatgtgatgaaaaagtgttaaatttgaacgatttaaaaacgcatctaataaaaaaacataataaaaaatataataatgaatacaCAGATAGGGTTATACCTTTCAAGTTATCAGAAGATAATATATTCGAGTGTCAAGTTTGTGGTTTTAATTTCGAGACTTTCGGTTCTATAGAACGTCATATGAATGTGCATTTCAGGAATTATGTGTGCGAGGAATGTGGTTCCGGCTTCATAACTAAATATAGACTTCGAGTTCATACAAAATCATTACATGAATCTGGTAATTATCCTTGTGAGATATGTAAAAAGGTATATACAACTGCACAGAAGTTGAAAAACCATATATCAGCTGTGCATATGAGTTTAAAAAGGTTTAAATGTCCGCAGTGTCCGGAAAGATTctctgaatattttaaaagacataAACATTTAGTTGACGTCCATGGTATGACTCCgttgaaatacaaatgtaatgtttgtGATAAATCATTTGATAGAAGATATTCTTTGTCTCGACATTTAAAAAGAGATCATTTAGAAGAGAGGGATTTTCATTGTGACTTATGTACTTATTcatgttttacaaataatgaatTGCGAGTACATATGATAAAacataatggtgaaagaatttatgaatGTACTGTGTGTAAAAAGTCATATGCGaggaaaaaaacattaaaagaacaTATGAGAATACATAATAATGATAGAAGGTTCGCTTGTGCTGTTTGCGGACAGgcttttgtacaaaaatgtagtttaaaaGGTCATATAAAGACGCACCATTTAGAATATAGTATGCAGTGA
Protein Sequence: MEKRYGKCRFCVEKGEHQDLFTEYLSNGNKEIYMDIIMDCYNIYLSTNTTQSSLICSSCVEHLRNANKFRMMILDSEQQLLNAITDKETVFINVPASSHPLEEFESIKTEDIIDVKIENEDQESMDFDSEYFADNIEDICDISTKDIESEVLLTPEAALIARFPRNELKLPTRQSLKTTCPEFFKHLEMLKDKIVLPRMIAKLLETDPSPVKKRKLYISEKMGYLLNAALLLENSNATPFKNRNCSGFPCYYCRKLYENLDKLREHIKQHKKKEIKKILSTFGAEYFVVYVDVTDLKCTICDEKVLNLNDLKTHLIKKHNKKYNNEYTDRVIPFKLSEDNIFECQVCGFNFETFGSIERHMNVHFRNYVCEECGSGFITKYRLRVHTKSLHESGNYPCEICKKVYTTAQKLKNHISAVHMSLKRFKCPQCPERFSEYFKRHKHLVDVHGMTPLKYKCNVCDKSFDRRYSLSRHLKRDHLEERDFHCDLCTYSCFTNNELRVHMIKHNGERIYECTVCKKSYARKKTLKEHMRIHNNDRRFACAVCGQAFVQKCSLKGHIKTHHLEYSMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141103;
90% Identity: -
80% Identity: -