Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:318555-332392[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.016 0.84 9.7 0.1 3 20 176 193 174 197 0.95

2 13 0.064 3.3 7.8 0.8 3 23 237 257 235 257 0.97

3 13 4.9 2.6e+02 1.9 6.9 1 21 262 282 262 283 0.93

4 13 0.0017 0.088 12.8 0.9 2 23 332 354 332 354 0.97

5 13 0.0032 0.17 11.9 0.3 2 21 360 379 359 380 0.89

6 13 4.5e-05 0.0023 17.7 0.6 1 23 388 411 388 411 0.95

7 13 0.0069 0.36 10.8 8.2 1 23 429 451 429 451 0.98

8 13 7.5e-07 3.9e-05 23.3 1.5 1 23 457 479 457 479 0.98

9 13 8.5e-05 0.0044 16.9 3.0 3 23 491 511 490 511 0.98

10 13 1.8e-05 0.00094 19.0 3.2 1 23 517 539 517 539 0.99

11 13 1.4e-08 7.3e-07 28.7 1.0 1 23 545 567 545 567 0.98

12 13 3e-07 1.6e-05 24.5 1.4 1 23 573 595 573 595 0.99

13 13 0.0025 0.13 12.2 0.1 1 23 601 625 601 625 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.016	0.84	9.7	0.1	3	20	176	193	174	197	0.95
2	13	0.064	3.3	7.8	0.8	3	23	237	257	235	257	0.97
3	13	4.9	2.6e+02	1.9	6.9	1	21	262	282	262	283	0.93
4	13	0.0017	0.088	12.8	0.9	2	23	332	354	332	354	0.97
5	13	0.0032	0.17	11.9	0.3	2	21	360	379	359	380	0.89
6	13	4.5e-05	0.0023	17.7	0.6	1	23	388	411	388	411	0.95
7	13	0.0069	0.36	10.8	8.2	1	23	429	451	429	451	0.98
8	13	7.5e-07	3.9e-05	23.3	1.5	1	23	457	479	457	479	0.98
9	13	8.5e-05	0.0044	16.9	3.0	3	23	491	511	490	511	0.98
10	13	1.8e-05	0.00094	19.0	3.2	1	23	517	539	517	539	0.99
11	13	1.4e-08	7.3e-07	28.7	1.0	1	23	545	567	545	567	0.98
12	13	3e-07	1.6e-05	24.5	1.4	1	23	573	595	573	595	0.99
13	13	0.0025	0.13	12.2	0.1	1	23	601	625	601	625	0.92

Sequence Information

Coding Sequence: ATGAGCTCGACGAGCGTTAATATAGCAGACATTTGTCGAACATGTTTAGCTGCAGATTCCGTGTTGTATCCGATATTTGAAACGCATGTAGACAACCTGAGAGATGGAGTCGTCACTCTGGAACAGGCAATAACGGCAGTAACTGGAATAAAGTTTGAGAGAAACGAAGGATATCCagataaaatatgtcaaaacTGTAAAGATGCTGCTGACAAagctttcacatttaaaaagaagtcATGGGATGCAGATGTATATATAAgcgatttgttaaaaaaagaaaatgcaGAAGTTAAGAATGAAAAAAAGGATGATGTTGTTGTGAAGGTGGAATTGAATGATGCAGGTGATGATATTAACAACAGACTTGTGGAATCTGACAATGCTAGTGTTAAAACAGaaGGTGTCAATACTGTGAACATAGAACCGATTGAGAGTTACACAGTTAGTGTGacatcagataatttacaaccTTCACCAGATGTAGAAAACTTGACAGTGAAATCAGATGCTTGTCAAACATTTTGTCCTCTGTGCCGAGTTACCTATAGTGATGTAGACGGTCTCACAAAGCATATGTGGGAAATGCACACTGAGATCATGGGCCCCAAGAAGAGAGGCAGACCAAAGAAGATCAGTACAGAAtttgtattaaaaaaattactggaaAGAGGACTTTTGAAGCCGAAACCGGAAAACCCATACGGATGTACGTTTTGCAATAATAATTGCGTAAACGAAGAAGAATTGATATACCATATCTCTACGCATACAGaaaatgtttactattgCTGTGTCTGCAAGAAGAAATATATGAGCAAGAATTATTATGATACACATTTATGTTCGGAAGAGAAAATGGAATCGGATATTAATGCTaGTGAGTCATCTTCAAGGCAGGCTACGAAAGAACAAGACACTTTCCTTTATGTAACAACTCTTGATGTGATGCAAAGCAGAAGTACTGAAAAGGGTGAGTGTGCACTATGGCGTCGGTGCAAGCATTGCAGCGTGGTGACGTCAACACCCAAGGAACTCGCTGACCACATCGACACAAGACATCCATACCATTCGCTTAAATGCAAGGATTGCGATaaggtATTTCAAACGTTAAGCGCTTCGCGTGCCCACCGAATGCGTTGCGCGAACGTAGAGCGTACGTACAAGTGTCCGTCCTGTCCGCAACGGTTCACACGCGAGGTGTTTCTTAACAAACACATACTGGGTCGCCACGTCGGCCAACAAGCATCCGTAGACTTCCTATCTACCCCCGCAGGCAGAATCTACCAGTGCGATACATGCAAACAACACTTTCTCAAgAAGAGTTCACTGACAAAGCACATGAAGCATCACAACGCTGAAAAACCCTTCGAGTGTCAGATATGCAACAAACGGTTCCTCAGGAATGACAATCTGAAatctCACATGCGTGTCCACGGTATCGGGAACCGTAGTACAGCGACGTCGCTGTGTCTCTACTGCGGGAGAAGTTTCACATGCTCCTCAAACTTCATAGTACATATGCGTCGACATACCGGAGAGAAACCATATAAATGCGACTTTTGCGGCAAAGGATTCCCGCGCTCATCAGACCTCCAGTGTCACAGGAGATCGCACACTGGTGAAAAGCCATACATTTGTCAGATATGCGATAAAgCGTTCTCCCGCAGCAACAAACTGACGCGTCACATGCGCGTGCACACCGGCGCTAGACCGTACAAGTGTACGTACTGTGAGAAAGCATTCTCACAAAGTAACGACCTCAATCTCCACGTGAGGCGACATACCGGCGACAAGCCATATGTATGCGAGATATGCGGCGATAGATTTATacaggGTACAGCGTTACAGAGCCACCGTCGCTCCCAAGGGCACTATCCGGCGAATTCCGGGGAAGTACCGCTGCCTCCCCTCCCAGTAGATACCCCGGCTAGTGGGTCTATCTATAGATAG
Protein Sequence: MSSTSVNIADICRTCLAADSVLYPIFETHVDNLRDGVVTLEQAITAVTGIKFERNEGYPDKICQNCKDAADKAFTFKKKSWDADVYISDLLKKENAEVKNEKKDDVVVKVELNDAGDDINNRLVESDNASVKTEGVNTVNIEPIESYTVSVTSDNLQPSPDVENLTVKSDACQTFCPLCRVTYSDVDGLTKHMWEMHTEIMGPKKRGRPKKISTEFVLKKLLERGLLKPKPENPYGCTFCNNNCVNEEELIYHISTHTENVYYCCVCKKKYMSKNYYDTHLCSEEKMESDINASESSSRQATKEQDTFLYVTTLDVMQSRSTEKGECALWRRCKHCSVVTSTPKELADHIDTRHPYHSLKCKDCDKVFQTLSASRAHRMRCANVERTYKCPSCPQRFTREVFLNKHILGRHVGQQASVDFLSTPAGRIYQCDTCKQHFLKKSSLTKHMKHHNAEKPFECQICNKRFLRNDNLKSHMRVHGIGNRSTATSLCLYCGRSFTCSSNFIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPYICQICDKAFSRSNKLTRHMRVHTGARPYKCTYCEKAFSQSNDLNLHVRRHTGDKPYVCEICGDRFIQGTALQSHRRSQGHYPANSGEVPLPPLPVDTPASGSIYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01148997; iTF_01145425;
90% Identity: -
80% Identity: -