Ppol003108.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:1251721-1264298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00062 0.032 14.1 6.7 1 23 187 209 187 209 0.98 2 13 1e-06 5.3e-05 22.9 0.5 3 23 223 243 222 243 0.98 3 13 0.014 0.74 9.9 2.6 2 23 252 273 252 273 0.98 4 13 0.00044 0.023 14.6 2.0 1 23 279 301 279 301 0.97 5 13 5.2e-06 0.00027 20.7 0.9 1 23 307 329 307 329 0.97 6 13 2.9e-05 0.0015 18.3 8.6 2 23 336 357 335 357 0.97 7 13 8.8e-05 0.0045 16.8 0.5 1 23 363 385 363 385 0.96 8 13 1.4e-06 7e-05 22.5 1.2 1 23 391 413 391 413 0.99 9 13 4.7e-05 0.0024 17.7 0.5 1 23 419 441 419 441 0.98 10 13 0.0022 0.11 12.4 1.8 1 23 447 469 447 469 0.96 11 13 0.00023 0.012 15.5 1.1 3 23 477 497 475 497 0.97 12 13 0.00033 0.017 15.0 0.6 1 23 503 525 503 525 0.97 13 13 0.0008 0.041 13.8 3.4 1 23 605 627 605 627 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCTGTCAATAAACCTAATCTTTTGAACCTAGAAAAAGTGTGTAGAGCTtgtttgcaaattaaaaaggaCATGAGACCTTTATTCGAACAACTTACTGCAACAATGTTGATGGGGATATCCAACTTGCAGGTGGCGATTGGCGATGGTTTACCCTCACAGCTGTGTCTCCAGTGCGTGCACCAGGTATCGAGATGCCATGCCTTCAAGGAGATGGTGGAGagaaatgacgtcacaatacGGAATCAGCTGAAGTGGGAAGCTGACGAGATtcttaagaaaaatGATGCTCAAATCGATTTAAGTTGCTCAGAGCAACCTTTCATCCAGTACATTGAAGTGCCAATGGCTAACAGCACTCAGGTGCTGGATGAATTCTTCACTACAGAACAAGTACAAACAGATAAACCGGAGAATGCAGAGAAGACTAACTTTGAAATCAATAAGGAACAAACCATACAAGCACCAGTTAAAGATGACGAAGCTCTTAACATGGATGAGAACTACATGCAAATGGTGGTGTTCCAAGTGACGTCATCAGTCTCCCCCGGCCGCCATGTCTGCAACCTCTGCCATAAAGAGTTCAAACACGGCAGGTGGCTGAAGATGCATATGAGATCCCATACTAATTGGATAAAGGCAAATTGTAAGAAGCCGCCGATGTGTCCCGTCTGTAAGAAGACTTTTAAGGGTCCAGGTATGCTACGCATGCATATGCGAACGCACGAACAGCGTCCTCAAAAACAACCGACATGTTCCGTCTGTCAAAGAACATTCCAGAGTAAAACGATCCTCTATCGCCACAGACAGACTCACTTCGAACAGAAAATGCACCAATGCACTATCTGTGAGAAACGCTTCTTTAGCGGCTACGCATTAAGGTCGCATTTGGCTCGACACAGAGGAGAAAGACCATATATTTGCACCATTTGCTCTAAAAGCTTCTATAATCCAACTGATTTAAAGGtgcactttaggctacatacagGTGAGAAACCATTAAAATGTACAGAATGCAGCAAGACATTCCGGCGTCATTCCACGCTGTGCCAGCATATGAAGAAACACCGCGGCATCAGGAATCACATCTGCGTCGTCTGCAATAAAGGATTCTATGAAGTCTCCAAACTTACTGCACACATGAGAGTACATACAGGCGAAAGGCCGTACGAGTGCCAGTACTGCGAGCGCAAGTTCGCACAGCAGTCTGCTCTCATCTACCACCGGCGCACGCACACCGGCGAGAAGCCGTACAGCTGCAAGGTGTGCCCCGCGCGCTTCACCACCTCCTCCGCGCGCAACAACCACATGGTCACCCACACCGGCACCAAGAAGTTTATATGTCCCGTGTGCTACAAAGGTTGCACATCCCGCACAGAGCTTCGCATACATTCCAGTAAGCATACTGGAGAGAAGCTCTTCGGATGTGAAGTGTGCTCCCAGAGGTTCAGCTCCGCCTCATATTTAGCCGTGCACAGGAGACACCACACTGGAGAGAAGAAATACCAATGTCTGCCGTGTGGCAAGAGTTACATAGAATCGAGTGCTtacaagaaacatttaaaatcacaCATGGGTAAACAAGACAGTGAGCCCACAGAAAATAATACACCAGAATCTGATAAAGAAGAAAGTGGAAAGGAGACACCTCATGTGATAACTATTACTGAAGAAAAATCGGACGTTCAACAACCACAACAAATACAACAATTGCAACAACAACAAtcacaacaacaacaacaacaaacaCAACAATCACAACCACAAGAACAGCCTGTTCAGAATATTATTGGTCCTACacagaagaaattcaaatgcGGCCTCTGTGTGAAAACTTACATGTATCTGCACAGTTTAAAGAAACACATGCTCTCACATATGACggaacatcatcatcaacaaCAACAACTACTAGAAGAGCAACAACAACGACTACAGCAACAACGACAACAGCATCAagaacaacaacaacaacaacaacaacaacagcaGCAGCAACAGCAACAGCAACAGCAACAACAGCAACAacagcagcagcagcagcagcagcaacagcaacaacaacaacagcaGCAACAACAACAGCACcagcaacaacaacaacaacatcATCAACGTCAAGCGCAAAGCCAGCTGCAATCACAACAGTTGCAGCAATCGCAGCAGCTGCAGCAACCTCAGTTGCAACCGCAGCAGCTGCCGCAGCAGCAGGTGGTGCAGGTGGGCGGCATGCCGCAGCTCGCGCTACCTCTGCACGTCACAGGAGTGCAGGGTGGGCAGCACTACCCGGTGATATCTTCTGTACAATCGCTGCAATTGCAGCAAACTCATCAACAAGTTAATACGCCACAGCCGCAACAGTTGCAAGTGCAGACAATACAGATCCATCCGCAGCACCAGCCCATACAAATACATGCTGTGGGCGTGCAGCAAGTCCAGCAACAGCAGCTGCACGTAGCTACTTCTGCGTGTCAGACTATGCTGCCTAATATACTACAGCTCCAACCTGCAGTAGCAGTATCAGGGTTAAGCCAGCAGGAGCTAAGCGGCGTCGCGCACCGCATCATACTGCAGCAGCCGCCCACGCATCCCGCACTATACTCCATACACCACTGA
- Protein Sequence
- MAAVNKPNLLNLEKVCRACLQIKKDMRPLFEQLTATMLMGISNLQVAIGDGLPSQLCLQCVHQVSRCHAFKEMVERNDVTIRNQLKWEADEILKKNDAQIDLSCSEQPFIQYIEVPMANSTQVLDEFFTTEQVQTDKPENAEKTNFEINKEQTIQAPVKDDEALNMDENYMQMVVFQVTSSVSPGRHVCNLCHKEFKHGRWLKMHMRSHTNWIKANCKKPPMCPVCKKTFKGPGMLRMHMRTHEQRPQKQPTCSVCQRTFQSKTILYRHRQTHFEQKMHQCTICEKRFFSGYALRSHLARHRGERPYICTICSKSFYNPTDLKVHFRLHTGEKPLKCTECSKTFRRHSTLCQHMKKHRGIRNHICVVCNKGFYEVSKLTAHMRVHTGERPYECQYCERKFAQQSALIYHRRTHTGEKPYSCKVCPARFTTSSARNNHMVTHTGTKKFICPVCYKGCTSRTELRIHSSKHTGEKLFGCEVCSQRFSSASYLAVHRRHHTGEKKYQCLPCGKSYIESSAYKKHLKSHMGKQDSEPTENNTPESDKEESGKETPHVITITEEKSDVQQPQQIQQLQQQQSQQQQQQTQQSQPQEQPVQNIIGPTQKKFKCGLCVKTYMYLHSLKKHMLSHMTEHHHQQQQLLEEQQQRLQQQRQQHQEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQHHQRQAQSQLQSQQLQQSQQLQQPQLQPQQLPQQQVVQVGGMPQLALPLHVTGVQGGQHYPVISSVQSLQLQQTHQQVNTPQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSACQTMLPNILQLQPAVAVSGLSQQELSGVAHRIILQQPPTHPALYSIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149763; iTF_01141082;
- 90% Identity
- -
- 80% Identity
- -