Ppol003489.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio polytes
Gene Symbol
mod(mdg4)
Assembly
GCA_000836215.1
Location
NW:1384195-1625254[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.3e-05 0.014 14.8 0.2 6 44 290 326 288 326 0.93
2 4 2.6e-10 2.8e-07 29.9 4.1 3 44 415 455 413 455 0.97
3 4 5.3e-10 5.7e-07 28.9 6.0 3 43 518 557 516 558 0.95
4 4 0.012 13 5.4 1.3 3 43 574 616 572 617 0.86

Sequence Information

Coding Sequence
ATGGCGTCGTCCGACGAACAATTTTCACTATGCTGGAACAATTTCCATGCGAATATGTCAGCAGGCTTTCATGGCCTGCTGTCACGTGGAGATTTAGTGGATGTAACCTTGGCTGCCGAAGGCAGAATTTTACAAGCACACAAATTAGTTTTATCCGTATGTTCTCCCTACTTtcaagaaatgtttaaaatgaatcCAAACCAGCATCCGATAGtatttttaaaagatgttAGTCATTCAGCGCTAAGAGACTTATTACAGTTTATGTATCAAGGTGAAGTTAATGTTAAGCAAGAAGAATTAGCGTCGTTTATTAGTACCGCGGAACAACTTCAAGTTAAAGGTTTAACCGGTAACCAAAATGAAGAAAGTTCCACGCCATCCAAACCAAAGCCGACCTCGAGGCCAGGCCCGAGATCGTCACAACAACGGATATCTGCTAAGTTAGAGACTGATTTAGATTCTAAGCCCTCCTTAACTCCAGTAGCAATTAAGAGACCAAATAGGCCATCAATAGCATCAAATAATTCGTCATCTTCTCAAAGTGGACCCGCGAAACGGAAATGTGTTGACCCATTAGAAGCCGGACCCTCTGGTTCTGCTAAAGATGAGTTTGTTACGATACCGGACGAAGATGAAAACAACGCTGTGGCACCCAAAATGGAACCTGAATTTGTTAACGAAAGCATGTGGGATGATGACGATGAAGGCGCTAACAATGACGAAACGAACTTCGGCGAAGATGACTCTAATATGGAAATGTCTGGATTTGATGGTTCTGCAACTGGTGATGGCAATATATCTGGAGGTGGGGAGGGTGGAGCTGTTGGGGATGCACAAGatGTGTTGCCAGAATGGGTTTCAATATATTTCCTGAAAATTTCAGAAGatgaacaaaaatgtaatgtatgtGAAGTGATTATTGAATCGGATGAGAAATCTTTGAAACTCTTCCATCATATTAGAGATAATCATAAAGAGGTACatgatatacataaaaatagtacCGAAGGTGCGGTGGGGTTTCAAATTGAATTCCTCCATTTGCTGAAAGACGATGATCCAAAAACTCAACCGATGGTACTTGGACCGGTTTGTGAAACAATGataagtgaaaataaaaccGAAGATAAGAGTGTAGAAGATAATGGAGATTTGCAATTCGTTTTGATACCaactaaaaagaaaactaacaaGAAGGGACCAAACCGTATGGTGCATGAAAACCGAAGACGAAGTTGGGTGTGGAAATATTTCaagaaattaagtaatataatataccGTTGTACATTATGTAATGTTGTACTATCTATAAAGGCTTGTAACACAAACAATATGAACAGGCATGTGCGTGCCAGACATCCGAATATATACAAAACTGAAGTAGGAACGAGACTTGATTCAGATTCTGAAATTCCTACTGAAATGGACATTCCAGTAAGTCAGTCTACTCAGCAAATCAAGGTGGAAGATTCAAGCCTTATTGTAGAGGAAACAGATATGGATGATGCATATTATGAGGCTTTGGGTCAGAAACAACGACGCAGCTGGGTGTGGTCGTACTTCAACCGCGTGTCTAAAACATTAGCGCAGTGCAAGTTGTGTAACAGAAACATCTGTCACGGTGGAAACGCGACCGGCAACATGAACAGACACCTCAAGATGGTACATCACAAGACGGGAGGTGAGGGAAGCTTTACAATAGAAGACAACAGTTGGGTTTGGAAAGTCTTCGATTGTATGGAAGATGATTTTtattcatgtaaaatatgtcaatataaatgtatgaagTTTGAAGATATGGAGAGAAATGTCGGCTGCATTATGGAACATCTGAAAATAGAACATGGCGTCGTGTCCGGAGATCAAATTGTAATCGATCCTGATTACTGA
Protein Sequence
MASSDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRILQAHKLVLSVCSPYFQEMFKMNPNQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEESSTPSKPKPTSRPGPRSSQQRISAKLETDLDSKPSLTPVAIKRPNRPSIASNNSSSSQSGPAKRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWDDDDEGANNDETNFGEDDSNMEMSGFDGSATGDGNISGGGEGGAVGDAQDVLPEWVSIYFLKISEDEQKCNVCEVIIESDEKSLKLFHHIRDNHKEVHDIHKNSTEGAVGFQIEFLHLLKDDDPKTQPMVLGPVCETMISENKTEDKSVEDNGDLQFVLIPTKKKTNKKGPNRMVHENRRRSWVWKYFKKLSNIIYRCTLCNVVLSIKACNTNNMNRHVRARHPNIYKTEVGTRLDSDSEIPTEMDIPVSQSTQQIKVEDSSLIVEETDMDDAYYEALGQKQRRSWVWSYFNRVSKTLAQCKLCNRNICHGGNATGNMNRHLKMVHHKTGGEGSFTIEDNSWVWKVFDCMEDDFYSCKICQYKCMKFEDMERNVGCIMEHLKIEHGVVSGDQIVIDPDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01149750;
90% Identity
iTF_01144692;
80% Identity
iTF_01147479;