Pphe015072.1
Basic Information
- Insect
- Papilio phestus
- Gene Symbol
- -
- Assembly
- GCA_018231625.1
- Location
- DVQH01006088.1:2172-6350[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0006 0.071 15.1 3.5 1 23 421 444 421 444 0.96 2 15 3.2 3.8e+02 3.3 1.2 2 23 524 546 523 546 0.94 3 15 0.029 3.4 9.8 3.1 1 23 552 575 552 575 0.90 4 15 2.3 2.7e+02 3.8 0.2 1 19 613 631 613 636 0.76 5 15 0.0013 0.16 14.0 1.4 1 23 642 665 642 665 0.96 6 15 0.011 1.3 11.1 5.8 1 23 771 794 771 794 0.95 7 15 0.00081 0.095 14.7 2.5 1 23 825 848 825 848 0.97 8 15 0.97 1.1e+02 5.0 0.5 1 22 969 990 969 992 0.80 9 15 0.00015 0.017 17.0 2.9 1 23 998 1021 998 1021 0.97 10 15 1.3 1.5e+02 4.6 2.8 1 19 1039 1057 1039 1062 0.79 11 15 0.015 1.8 10.7 2.4 1 23 1068 1091 1068 1091 0.95 12 15 0.74 87 5.4 0.3 1 21 1154 1174 1154 1177 0.84 13 15 0.0029 0.34 12.9 1.3 1 23 1183 1206 1183 1206 0.95 14 15 0.39 45 6.3 0.1 1 23 1288 1311 1288 1311 0.88 15 15 0.0014 0.17 13.9 3.2 1 23 1317 1340 1317 1340 0.96
Sequence Information
- Coding Sequence
- ATGTTCTCCGGAGTTTTACGCCGAGTGTCCTTTGGTCTTTTGGGCACGGGTGAAAATCCGGATGGCGAAGACGAGGATGGTAAAACCGAAGAAGGGGATGAGGATGGAAGTTCTTACCAACTTGAAACGGCATCCCTCTCTTCACCGATGCGCCTACGAAGGATGTCAAAAGTCACTCACGAACCGTCAAACGTGGCGAAAGGTTTGCAACGTCGGCAATTGCAGCAGAAAAGGCAAAGCAAACCAGGAGTTGCTTTAGAGCCAACGCCAACCGAGACTTTGCATCAATCACCAATGACAAGCAAGGTAAATACGACTTTGAATTCGAGACAAACTGCTATGCATCAAGCATCACCACAACAGAACAGCAAGTCAAATGGTGCTTTGGAATCGGTGAAATCTGTGCCACAATCGCCTAAATCCAGCAATGGAAATAGTGCTTTAGAGCCGGcgaaatcatcatcaaagcAGTCTATCAAGTCCAATGGTACTTATGAGTCACAATCGTCAAAACCGAACAAGTCGAATGGTTCTCTGGAATCAGCTTCACCACAACAACAATCACCAACGACAAGCAAGGTAAATAGTGCTTTGGATTCGGAGAAATCTGTGCATCAATCACAGTCTAAACCGAACAACACGTCAAATGGTACTTGTGAATCGGGGAAATCATCGTCAAAAGTGAACAAGTTAAATGGTGCTTTAGAGCCGTCTAAAGCGGCGCAAAAATTCTCTCCGTcttccaaacaaaacaaaccagAGGTTGCTTTGGAGACCTGTGCGATGCAACCGTCGGCAGCTGTGGCAAACAAGCCAAATGTGGCCAAGTGTTTGCTGTGCAAGCGAGTGTCGCCCCATCAACATGTTGTGCATTTTGATCCCAATCGTGGCATGTTTTCCTCCCGAATCGCCTCTCTCGTCGACTCGGGTCAAGATCCGATCGAAGGTGGAgatgaagaggaagaagacGAATCCATGAATCACCTTTCTTCATCTCTGCAAAACGGCGTTCAAGAGGAGCCAAACTCAAGTGCCAGTGTTTGTATGGCTACAAGTACTGATGACTTAAATGAGGTTgcttcttctacttcttcttcaaCGGGGCAACGAAGACTTAAAAGATCCATAGCTATACAAACGGATCCTACAAACCGAGGTTCCCCGAGAAAGATTTGGAAATGTTGGCACTGTTCGCAGGTGATGGATGGATTCGCCATTCTGTTGCGGCACAGCTTATCCGAGCACAAAGATCCGTTTCTGTTCCATTGCAACCACTGTCCGGTGGCCTACAAAGAAAGGAGTAACTTGTTGAGACATCTAAGAGAGAAACACGGGGAAAATGTTGATGAAATTGATATTTCACAGGAAGAGACGAAAGAATTCGAAATCCAATCAGAAATGATTAAACCGGAAAAATCTGCCTATACCCAAACTGGATCTGATGATGTTGATAAAGAGGATGAGTTAGTTAAATCTACTACAATTGCTTCttcttctactactactaccacTAGCTCATCGGGTAGTAAAAAGCTTGGAAAATCTCCTGGTGCCTACTTGAAAGTTTGGAAATGTTATCACTGTTCGGCACGGGTGGATGGATTGGACAACTTTATGCGGCATAATCAGTCTCAACACCAGGATCCTAATCCGTTTCATTGCCGTACCTGTCAAGTGTCCTATCGGGACAAGAGTTCCTTGGTTCGACATTTTGAAGAGAAACATCCCTCACGTGATCCAAATCAGATAGATGAAGAGAGTGAGGATGAGGCGGAGGAAGAAGAATTCCGCAGTCAATCTCAAACGAAGAAAGCTGCAAACTCCTTGACTAGACAGTACACATGTTGGCACTGTTCCGAGGTGTTTGAAGGTGTTCGTGCGATTGTGAAGCACAATGTGTCAGTGCATCGAGATTATTTGCCCTTTCACTGCAACCTCTGTCCGGAGGTGTTCAAGGCGAATGGTGAATTGCTTCGGCATAAACGAAACAAACATGGACTTCAAGATGATTCGGAATCTGATTCTGAAGAAGTGGACGAGGAAGCATCTTCTAGTCAATCGATCTCCAGtggaaaacaacaacaacaatcgaAGGAGATTACCGAGTCTAATCTGGCATCATCCTCTTCCGCATTGCAGAAGGAGTTAGAAGGAAGTTctagcaaaacaaaaacaagcaaaCCCAAATCGATGAATGGTGGAATGCTTGCGATTGCAAAGCGTTGGCAGTGTTGGTTTTGTCCGGAAGTGTTGGAGGGAGTGAATGGGCTATCACAGCACACTATTTCACAGCACAACGATCACTACCCGTACCACTGTGACCACTGTCCGGCTAAATTCAAGAGTaactttttgttgaaaaaacatAATCGAGAGAAGCATGGAGTGGTCAACAACGGACAAGAGATAGTCGATGATTCGGGAGTGCTTGAAGGAAACAGTGAGTTGGTGAATAATCAAGAGAATTTTCCCTTTCATTGTGACCAATGTTCGGAGGTGTTCAAGGTGAATGATGAATTGAATCAGCATAAACGAAGCAAACATGAATTGGTGAACCATGAACAAGAGATCAACAATGAAGAATCTATgcaagttgatgatggtgatgaccAAGAGGAGGTTACTGGTGCTTTGGAGCCTGCAAAGTCTTCAATGTCTCAATCACCAAAGTCAAATGGTACTATTGATGAATCATCCAAATTGTTACCACAATCATCATCCCTAAACAACGCGTCAAATGATGCTTCAGAGCCATCGAGACCtacaccaccaccaccaccatcatcatcagtgTCTAATTTGGAAGAAGATCAGCAACCGTGCAGTCAATCAGATGAGATTACTCAATCCAATCTGGcctcatcatcaacatcaagaTCGGAGATGagatttataaagtttaccTACAAGTGTTACCACTGTTCCGAGGTTTTTGAAGGTCTGAAAGCGATTATAGAGCATAACGCCAGGCAACATCAGGATTATCACCCGTTTCACTGTGATGTTTGTTCGGTTTCATTTTCGGTGAATTCAAATTTGCTCAAACATAAACGAACGAAACATCCCGAATGCTTTCCGAAGCGAACGCAAAAGAATGCATATTCACAGTTGGAATACAAGTGTTTTCATTGTTCCAAAGTGTTCGAGGGTATAAAGACGATTGTCAAACACAACCTTCACGTGCATCGCGATCGTTCTCCCTTTCACTGCGCCCTCTGTCCTGCGTCATTTGGGCAGAATTGTTCATTGCTTAAACATATACGAGATAAGcattcatcattatcatcagtGACCAGCGGAGAACCACAACAACAGATGCAAAATCATGATGATTCGCAACAAGAAGTGGATTCGAATGAGCAGTCAATCGCCGAATTCACTTCAGCATCTGAAAACATGGAGAGTCAAGCCGTTGAAACGAGTCAGCAAATCGTTATTCCTTATACCAAGTTTCGTTATTTTAAGTGTTGGCACTGTTCGGTGGTGTTTCGAGGCGTAGATGCCGTGGTGAAACATAGTGTTTCAGAGCATTCCGATGGTTCACCCTTTCATTGTGACCTCTGTCCGGCGACATTCGTGAACAACGCCTATTTGCGTCAGCACAACCGTGAAAAACATCAAGTCGAGAATCTTGGACTTCAGGTGGTCAATTTGGATGAATCACAAGAAGTGGTGCAAGCAACTTCAAGTCCATCGATCACTAACAAGGAGACTTTGTCTCAGAAAGAAGCTTCATTTTCGCAGAATGATGAGCCGAAGACGAGTTCCGAGTCTACTCTAACTTCCGAAGGAAATGCGATTAGATCTTCCGTTGGTTCTAGTAGTTCAAGAAAAGTGGATAGGTCTCATAATGTTCGTTATTTCAAGTGTTGGTACTGTCAGGTGGTGTTCAAAGGAGTGAGTGCCGTTTTGGAACATAGCCTATCGGAGCACAACGATTCTCTGCCCTTTCACTGTGATCTCTGTTCGGCGTCATTCAAGAACAACGGTTATTTGCGTCAGCATTACCGGGAAAAACATAGAATGGAGAAGCGTGGACTACTCGTGATCAATGTTGATGAACTGCAAGGACAAGATGTTGTAGATGCTGCTGAATCTACAAATCAACCAGCAGAGGTGAGTggaatattttgtttggttttagGCGAATTTGAACAGGAAatgttagattcaaattaa
- Protein Sequence
- MFSGVLRRVSFGLLGTGENPDGEDEDGKTEEGDEDGSSYQLETASLSSPMRLRRMSKVTHEPSNVAKGLQRRQLQQKRQSKPGVALEPTPTETLHQSPMTSKVNTTLNSRQTAMHQASPQQNSKSNGALESVKSVPQSPKSSNGNSALEPAKSSSKQSIKSNGTYESQSSKPNKSNGSLESASPQQQSPTTSKVNSALDSEKSVHQSQSKPNNTSNGTCESGKSSSKVNKLNGALEPSKAAQKFSPSSKQNKPEVALETCAMQPSAAVANKPNVAKCLLCKRVSPHQHVVHFDPNRGMFSSRIASLVDSGQDPIEGGDEEEEDESMNHLSSSLQNGVQEEPNSSASVCMATSTDDLNEVASSTSSSTGQRRLKRSIAIQTDPTNRGSPRKIWKCWHCSQVMDGFAILLRHSLSEHKDPFLFHCNHCPVAYKERSNLLRHLREKHGENVDEIDISQEETKEFEIQSEMIKPEKSAYTQTGSDDVDKEDELVKSTTIASSSTTTTTSSSGSKKLGKSPGAYLKVWKCYHCSARVDGLDNFMRHNQSQHQDPNPFHCRTCQVSYRDKSSLVRHFEEKHPSRDPNQIDEESEDEAEEEEFRSQSQTKKAANSLTRQYTCWHCSEVFEGVRAIVKHNVSVHRDYLPFHCNLCPEVFKANGELLRHKRNKHGLQDDSESDSEEVDEEASSSQSISSGKQQQQSKEITESNLASSSSALQKELEGSSSKTKTSKPKSMNGGMLAIAKRWQCWFCPEVLEGVNGLSQHTISQHNDHYPYHCDHCPAKFKSNFLLKKHNREKHGVVNNGQEIVDDSGVLEGNSELVNNQENFPFHCDQCSEVFKVNDELNQHKRSKHELVNHEQEINNEESMQVDDGDDQEEVTGALEPAKSSMSQSPKSNGTIDESSKLLPQSSSLNNASNDASEPSRPTPPPPPSSSVSNLEEDQQPCSQSDEITQSNLASSSTSRSEMRFIKFTYKCYHCSEVFEGLKAIIEHNARQHQDYHPFHCDVCSVSFSVNSNLLKHKRTKHPECFPKRTQKNAYSQLEYKCFHCSKVFEGIKTIVKHNLHVHRDRSPFHCALCPASFGQNCSLLKHIRDKHSSLSSVTSGEPQQQMQNHDDSQQEVDSNEQSIAEFTSASENMESQAVETSQQIVIPYTKFRYFKCWHCSVVFRGVDAVVKHSVSEHSDGSPFHCDLCPATFVNNAYLRQHNREKHQVENLGLQVVNLDESQEVVQATSSPSITNKETLSQKEASFSQNDEPKTSSESTLTSEGNAIRSSVGSSSSRKVDRSHNVRYFKCWYCQVVFKGVSAVLEHSLSEHNDSLPFHCDLCSASFKNNGYLRQHYREKHRMEKRGLLVINVDELQGQDVVDAAESTNQPAEVSGIFCLVLGEFEQEMLDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -