Basic Information

Insect: Papilio phestus
Gene Symbol: PRDM10_1
Assembly: GCA_018231625.1
Location: DVQH01008480.1:49-4982[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.6e-05 0.01 17.8 3.8 1 23 574 596 574 596 0.98

2 11 3e-05 0.0035 19.2 1.8 1 23 602 624 602 624 0.99

3 11 0.0016 0.19 13.8 1.7 1 23 733 755 733 755 0.96

4 11 3.7 4.4e+02 3.2 4.0 2 23 763 784 762 784 0.94

5 11 0.021 2.5 10.2 0.6 1 23 795 817 795 817 0.96

6 11 0.042 4.9 9.3 3.5 1 23 825 848 825 848 0.97

7 11 0.00037 0.043 15.8 3.9 1 21 853 873 853 875 0.95

8 11 1.1e-05 0.0013 20.6 3.7 1 23 881 904 881 904 0.98

9 11 0.0066 0.78 11.8 1.2 1 23 945 968 945 968 0.97

10 11 0.00015 0.017 17.0 2.0 1 23 990 1013 990 1013 0.97

11 11 0.0092 1.1 11.4 6.0 1 23 1047 1070 1047 1070 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.6e-05	0.01	17.8	3.8	1	23	574	596	574	596	0.98
2	11	3e-05	0.0035	19.2	1.8	1	23	602	624	602	624	0.99
3	11	0.0016	0.19	13.8	1.7	1	23	733	755	733	755	0.96
4	11	3.7	4.4e+02	3.2	4.0	2	23	763	784	762	784	0.94
5	11	0.021	2.5	10.2	0.6	1	23	795	817	795	817	0.96
6	11	0.042	4.9	9.3	3.5	1	23	825	848	825	848	0.97
7	11	0.00037	0.043	15.8	3.9	1	21	853	873	853	875	0.95
8	11	1.1e-05	0.0013	20.6	3.7	1	23	881	904	881	904	0.98
9	11	0.0066	0.78	11.8	1.2	1	23	945	968	945	968	0.97
10	11	0.00015	0.017	17.0	2.0	1	23	990	1013	990	1013	0.97
11	11	0.0092	1.1	11.4	6.0	1	23	1047	1070	1047	1070	0.96

Sequence Information

Coding Sequence: ATGTCATTATCTCCATGCTCATCAGCTCCCATTGGTGCTGATGAGGTGCTTTACAGAGAAacttataagaattttttagcACAAAAGTATGCGGCCGAATCAACATCGGATGGTGATTCCGAGTCTCACTCGAATACAGTAAATCACTTGTCACAATCTACCCAAAACTTTTCGAATCAGATCTCAAACTTTTATCCATTCTCTCCACTGGTGAGCAGTAGTTCTCATTATGACACTCGAAACATTTTGGGAGAGAGCTTGCTCGAGTCCTCTGTGGACTCGTTGCAGGTGGAGTCGAGTACCACGGAGCAAGTCTCGACTCACTCAGCTGTCTTCGGCGAGTCTTCCCTCGAAAGTTTGATGAAATCCAATGTGGCCAATCTACCGATTGTGTCCACTGCCAGTGTGAGTTCGAGCTCGAACCACTCAATCTCGGTTGTGACTGACCATTCTCAGGTGGGTTTGGTTCCAACAAGCCTCTTCGATGGGGCAGTGAGCACCGACATTGCGGTGGACTCCACCGTGTCAACGCCCAGTACTATTCAATCCTCGATGGCATCCTACACTTTTAacaactttcaaacttccacCTGCAACTCTTCAATGTCCAGCGTATTGGCCTATGGCTTATCACCTAGCTATCAcaacaatttgattcaaattgataACTCCCAACCACTGCTTTCATCCCTTGCATCGCCAAACATTCCCCTTGATCCCTACTTGAGCCAGTCAAATATTTTAGATCGAAGAGATGATGCGGCACTTATCGAACATCAACTCATGACACCCGTTCTTTCATCATTCTCGAACGATGGGCATTGTCTGTTAAATGACAATAATTTGTCGGATAACTTTTTACATGAAATGTCAAGCGAACAGCAATACGTGGAGATCGATGCATCTATTTTGCAAGAGATTGTGGTCAATGATTCACCTGTTTTGACTAGAGCCAAAGCTTCTTTGCCAATTGAGTACTTATATTTGCAGGAGGTCGATGGTTATTATTCGGTTTTTGCTCGGAAACCTTTACCGAAGAGAACTCAGTTTGGCCCGCCTGAAGGCGTTCTTATCTCCATTGACACCGAACTTTCACCAGACTCCATTGCTTGTAGTTCcaaaaattctataataatttttctttcaagtACAATAATTCTTAGTCAAAGCGATGAGAATACCTCGAATTGGACTCGTTTTATTAAACCAGCCACCAATGCTGAAGAGCAGAACCTGGAGCTTATTATCAAGGAGATTGAACCCACtgaaatgaaattgttttttattgctaCTCGAAATATTATGGCCAATGAAGAGTTGAAAGCTTGGTACTCCAAAGATTATGCCACGTCATTCAACATCAGATTACTTGAAGAACAATCACTGTCGGCATTGGCTGGAGTTGAATTGGATTCCGAAGGTCGTCCAAATGTCTTAGCGTCAGGGCATAAACTTCGAAATAAGATTGCCAAAACTCAACAATTAACACAAGCAACTCATGCATCTTTGACCGAAACTAGAGAGTCAGAACACGATATGGTTTCTCAATCAGTAAATGAAACCCAAGTACACGAGATGTTTGATCCCAATGCCACAATTATTATAGCGCCATCAGAGAGTCAAAAAGAAAATGGGAACTCTTCTTTGAATGCAACTGATCCACaaggaaaatatgaaaaaccgAACAGTTCAAGCGAAAAACCTGCAAACAAGGCTAGATTTCAATGCGAAGTCTGCAAGAAGTACTTTCCTCGTCACTATAGTCTTCGACGGCATCAAGTAATGCACTCTGGCGAAAAGCGGTATAAATGTCCGATGTGCGGAATGGCATTCAATCACGTTTACAATCGAAATCGCCACATCAAAATGCATAAGAGTCAGTCGGTTGAAACGAGCACTAGCTTGAGTGATTCGATAAAGAATTGCGAGAATAGTTCAAAGGAGACGTTGAAAGGCTCGGAAAACAATGGCTTGATGCATCTAAAGCAAGAAGAAAGCCCGGTGTCACATGTTTCACCTGATGATGGTCAAAGCGTGCAAGTGCAAACTAATGATCAGTCTAGTCCTCTTTTTGATCAACACTCGGAGACGTTGAGTGTCCCAGTCAAAGTAGTCACTTCAAGTGTGGATAGTGTCACTTCGAGTGGCTTGGACAAAGTCACTACTGCGATCCACAATGCATCTGCGGGCAAACATTTTCGCTGTTCACAGTGCTATAAACGATTCTCCACTGAGGAACGACTGGAAAAACATTCCATTGTGCATGACGAGTCAGCTAGGAAGTTGGTGTGCCACAGTTGTAATCGCAGATTTCTCACTCAATCTGCTCTTGCTTGTCATCTTAAAAACCACAAGATATCCGATGGAGAAGAAAAACGTAAATATGATTGCACATTGTGTGGACAGGTTTTCGACACAATTCATCTAAGACGACAACATGTTTTGGTGCACATTAATCCAGAAACTAATTTGTATCACTGTCCCAAGTGTGCTAAGACGTTTGACGACTTTTCGGTTATTCGCAAGCATTACAAGTCTTTCCACTCCGAGGAGAGCTTTCCATGCTCACAGTGTCATAAGGTGTTTCCGAGGCAAGACAAGCTACGTCTGCATATGCTGTGCCATAGTGATCGTTGGGAATTCAAGTGTAGCTCTTGTGACAAGCAGTTTAAGCGTAAAGATAAGCTCAAGGAGCATATGCAGCGAATGCACGCACCTGATCGAGATATTCGCATGGCTGCTAAAATGGCTGCTCGCTTGAATCGTATGAAGACTCCGCGGGCGAGAAAAATTTCTACCAAACCAACCCAGCCCAATTACGAGGaatttctttacaaatgtCAGCAGTGTCTATTTGgtTTTAAGAGAAGAGGCATGTTGGTGAATCACTTGGCTAAGCGTCACCCTGATATTCCTTATAATAGTATTCCAGAACTGAATATGCCAATTGTCAAGacTTCGAAAGACTACTACTGCCAGTACTGCGACAAGGTTTACAAATCCAGCTCTAAAAGAAAAGCTCATATTATTAAGAATCATCCAGGCCAATCTTTGCCTCCATCAAATCGCAACAAGGCAGTTACACCCGATTCGAGTCATAATTTTTCTGCCACTGTTGGAAGTATTCAGATCCACCCACACTTCTGTTCGTGGTGCCACAAGCAGTATGCAAGCAAGGCTAAGTTGATGCAGCATCAACGCAAGAAACATCCTGAGCAAATCTCACAAAGCGAAGGAGAATCAGTCAAAAAGTCACCAGTAGAGAATGCGAGTAACAGTTCGTCTTCAATCACGGCAAGCATTAGTGTAGCTTGCCCCATTACTACTATTACTCCGAGTGGTTCCGTTGCCACCACCAATGTTTTCAAACTCAACACTATCATCTCGGGTGATAAAGCTACCCTCACAAGAGAACCAATAGATCCGCACTCACTGGCTTTCAAGCATACTGGTCACTTGTACAAGGATTGCAACTCAAGCCAATTCATCTCCACTTCACCGACATCATGCCAGACCTACTCTGTAGACGGCTTTGAAGTATCCAACCAGTATTCTAGTTCCAAGAGTGATGTCTCCTTTTTAAGTGGCATGTCGAGTCAGTCGCAGACAACTGACACTCAGTATACGGTGGACTCGCAGGACACCTCACTCGATGACCTACTCAACATCAACCATATTATGCCTGCACAGCACAACTCCGACAACCTTACCAACTCTACCACCAGTGCGACCTCTTTCTCTAACAACACTCTTATTACTCTTCTAGCTTGCACTGTTCCATCGAACGTGCCGACATATTCAAACGATTTGAGTGAATTCTCGGACATCATCACCCAGATGGCTTCAGATTTTTCTAgcgaaaaacaaattttgggTGCAAGTCAAACCAATGATGGTTTGGAAACTACTGATATTATGATCTCAGGAGATAATCATTGGGGCCAAGTTTGTGAAGAAATGACCattgtttaa
Protein Sequence: MSLSPCSSAPIGADEVLYRETYKNFLAQKYAAESTSDGDSESHSNTVNHLSQSTQNFSNQISNFYPFSPLVSSSSHYDTRNILGESLLESSVDSLQVESSTTEQVSTHSAVFGESSLESLMKSNVANLPIVSTASVSSSSNHSISVVTDHSQVGLVPTSLFDGAVSTDIAVDSTVSTPSTIQSSMASYTFNNFQTSTCNSSMSSVLAYGLSPSYHNNLIQIDNSQPLLSSLASPNIPLDPYLSQSNILDRRDDAALIEHQLMTPVLSSFSNDGHCLLNDNNLSDNFLHEMSSEQQYVEIDASILQEIVVNDSPVLTRAKASLPIEYLYLQEVDGYYSVFARKPLPKRTQFGPPEGVLISIDTELSPDSIACSSKNSIIIFLSSTIILSQSDENTSNWTRFIKPATNAEEQNLELIIKEIEPTEMKLFFIATRNIMANEELKAWYSKDYATSFNIRLLEEQSLSALAGVELDSEGRPNVLASGHKLRNKIAKTQQLTQATHASLTETRESEHDMVSQSVNETQVHEMFDPNATIIIAPSESQKENGNSSLNATDPQGKYEKPNSSSEKPANKARFQCEVCKKYFPRHYSLRRHQVMHSGEKRYKCPMCGMAFNHVYNRNRHIKMHKSQSVETSTSLSDSIKNCENSSKETLKGSENNGLMHLKQEESPVSHVSPDDGQSVQVQTNDQSSPLFDQHSETLSVPVKVVTSSVDSVTSSGLDKVTTAIHNASAGKHFRCSQCYKRFSTEERLEKHSIVHDESARKLVCHSCNRRFLTQSALACHLKNHKISDGEEKRKYDCTLCGQVFDTIHLRRQHVLVHINPETNLYHCPKCAKTFDDFSVIRKHYKSFHSEESFPCSQCHKVFPRQDKLRLHMLCHSDRWEFKCSSCDKQFKRKDKLKEHMQRMHAPDRDIRMAAKMAARLNRMKTPRARKISTKPTQPNYEEFLYKCQQCLFGFKRRGMLVNHLAKRHPDIPYNSIPELNMPIVKTSKDYYCQYCDKVYKSSSKRKAHIIKNHPGQSLPPSNRNKAVTPDSSHNFSATVGSIQIHPHFCSWCHKQYASKAKLMQHQRKKHPEQISQSEGESVKKSPVENASNSSSSITASISVACPITTITPSGSVATTNVFKLNTIISGDKATLTREPIDPHSLAFKHTGHLYKDCNSSQFISTSPTSCQTYSVDGFEVSNQYSSSKSDVSFLSGMSSQSQTTDTQYTVDSQDTSLDDLLNINHIMPAQHNSDNLTNSTTSATSFSNNTLITLLACTVPSNVPTYSNDLSEFSDIITQMASDFSSEKQILGASQTNDGLETTDIMISGDNHWGQVCEEMTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -