Pphe011235.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio phestus
Gene Symbol
-
Assembly
GCA_018231625.1
Location
DVQH01002630.1:536-4327[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.8e-05 0.0044 18.9 0.6 1 23 260 282 260 282 0.98
2 16 0.5 59 5.9 7.7 1 23 290 312 290 312 0.98
3 16 0.0016 0.18 13.8 0.1 2 23 318 340 317 340 0.96
4 16 6.1e-06 0.00072 21.4 5.2 1 23 348 371 348 371 0.97
5 16 0.042 4.9 9.3 1.6 1 23 384 407 384 407 0.97
6 16 0.17 20 7.4 1.3 1 23 414 437 414 437 0.91
7 16 0.0035 0.41 12.7 1.1 2 23 497 519 496 519 0.96
8 16 0.074 8.7 8.5 2.4 1 23 527 550 527 550 0.95
9 16 0.0015 0.17 13.9 0.8 1 23 556 578 556 578 0.99
10 16 0.00054 0.063 15.2 0.7 2 19 585 602 584 605 0.92
11 16 8.8 1e+03 2.0 4.0 1 23 616 638 616 638 0.92
12 16 0.00027 0.032 16.2 2.9 1 23 644 667 644 667 0.97
13 16 0.036 4.2 9.5 0.9 2 23 675 697 674 697 0.90
14 16 0.0025 0.29 13.1 2.7 1 23 702 724 702 724 0.97
15 16 0.00038 0.044 15.7 0.5 2 23 732 753 731 753 0.97
16 16 0.00027 0.032 16.2 1.1 1 23 761 784 761 784 0.95

Sequence Information

Coding Sequence
ATGACAGTATTAGAGCGCAATTGCGACCAGCTGATTGTGGGAGCTAGGCTTCCAAATCTGTACAGTTTCAGTCAAACACCATGGCGTCGATTTCGCGATATTGTTCGTAAAATTGAATCCACTCTGTATGAAAAGCTTCTGGTGAAGTTGCCGGGCGATGAGCATCAGGAAGCGTCGAGGCACTATGGCACGTCCCTTGGAGGACTTGCGAACtatctcgatgaaatgtgCCGCAGATTGGATCAAGAAAATGGGCAACAGATACAGCAAGTGGGTGTGTTAGGACAGAGTCCCGATCCTGTGACTTATGTGATGGTTAATGCCACTACTGCTACCGGTTATAATCAACAATCTAACTTTCAGCAACTAGCCACTGGggtaaatgtaatttaccaGCAGCAGACTTTTGCTCAGCCTCAACTCAATGTGGCTCAACCTCaagaaaatgtacattttcaaCTTCAGCAAGTTCAACAAGATGTCTCTGTTGATGTTGATGGTATGGACACGTCATTTGCCGAGGATGATTTTTCTCAAAACGATTCCTCAAATGATTATCTTCAAGATTTGATAGAAGAAGCAAAGTCAAGTGAAGATCAGTATagcaaaaaaactattaataataaaaaatcaactatTAACAGAAACAGAGTTAGATCAAAGAAAACCGTCTCTGTTTACAAACCAAGACCAGATCGAGCTAGGATTAATTACCCTCATCTTGAGCCTCTTCCAGCTCAAGAAGGCGAAGATCCCGAAATGGCCTTGAAAAGACCTTTTAAATGTCCAACTTGCGGTTTGCGTTACATCAATCGAATGAACTTTCAACGGCATTGGTTGGTTCATTTGCCAGAAGAGGACAAGCGATTCAAGTGTGATCAATGTCCACTTAAATTCCACTTTGCTTGTTTGCTTAAAACTCATCAGTTGCACCACAAAGAGAAGAGTGTTCAGTGTCCCGACTGTGCAGCATGTTTTGCCTTGCCCTACGAGTTATACGCTCACCAACGGAACAACCACCAACCGGATCGGGTGAAACCACACAAGTGTGAGCACTGTGACAAGAGGTTTAACAAGCCAAGTGAGCTCAAGACACACATCAATTCGAAACATCTTAATATTAAGAGGAAGGTTCTAACTGAGAAGCGTTTCAAATGTGAAGTATGCGAAAAGATGTGTTGGTCGCGCATCGAGCTTCAAAACCACCTGGAACGAAAGCACAGTGGGCCGAAACCTACCTATCGCTGCGACTACTGTGGTCGGGAGTACCTCTCGAAGAAGATGCGCGATTCGCACATGAGCAAGGTTCACGAGAGCGAGAGTGGCCCACTGCAGTGTGGAATCTGCGAGGCGAGCTTGCTCACCAAGACCGATATGCGTGTTCACTTTCAACAGACCCATTCCGATCACAAATGCGACCAGTGCGACTCAGGCAATGCGATCGAGGCTCACGTGCACGCACATCCCAACCCGGAAGAGTTGACACTGCACTGTGACCAGTGCCAGGAGAAGTTCTTCGATCCGGTCGGCTTAGCCAGGCACAAGCGTAAGGAGCATTTTAACGATGATCCTAACAAGCATCCCTGTGGATTCTGTGATTTCATCTGCTCCAGTGAAAACGCTTTGACCATTCACCGACGACTCAAACACAATGATCAGCTTTTGTACACTTGCGAATTTTGTGGATCAAAGTTTCCCTCTGGCATTCAGTTACGTGATCATCGAAGGAGACATCTGATGAGCGACGATATACCATGTAAAAAGTGTTCGAAGCGATTCAAAACTCCACAAGAACTTCGGTCGCACTCGCTGAAATGTAACTCAACTAACACTGAGAAAGGAGTCTACGTGTGTACTGAGTGCAATCGCAAGCACAGTTCGCTATCACTCCACCTCAAGCACGTTCGTCTCCACAAGGGTGATCTTCCCTTCGAATGCACACTCTGCCAGGAAAAGTTTCCCAGTCGGTCCAAACTGAGACACCACCGTGATACTGACCATAAGGATGAACTACCCAAGTTAAAGTGTACAGAGTGCTCTATGACCTTTTCCAATGAAACACAGCGTGTGAAGCATGCTTTCAGTGAGCATAAACCCACTTCTTTTAATTGTAACCATTGCgaattaaagttttcaacAACAGAAGAGGTTCGAAAGCACGAGTTAACTCACTTTGAGTCGAGCCAACTCTTATCGTGTGAACAGTGCAACGAGAAGTTTGCTACTAAGGCTGAACTGGGAATGCATCGGAGAAGACACCGAGCGCTGACAGAGCCCAAGTTTATGTGTCAAATATGTGGCAAAAAGTATCGTTTTGAGAAAAATTTATCAAGTCACTCGAAGATTGCTCACAGTGGACTGGAGTTACCCCCAGAAGGAAGTGAAGTCTCTGCAATTGAACATGACTATGCAAAAAAGACTTCGTTAGAAAACCCAGAATCGTCTAATGAGGATTCTACCACACAAACCATTACTGACTGTTAA
Protein Sequence
MTVLERNCDQLIVGARLPNLYSFSQTPWRRFRDIVRKIESTLYEKLLVKLPGDEHQEASRHYGTSLGGLANYLDEMCRRLDQENGQQIQQVGVLGQSPDPVTYVMVNATTATGYNQQSNFQQLATGVNVIYQQQTFAQPQLNVAQPQENVHFQLQQVQQDVSVDVDGMDTSFAEDDFSQNDSSNDYLQDLIEEAKSSEDQYSKKTINNKKSTINRNRVRSKKTVSVYKPRPDRARINYPHLEPLPAQEGEDPEMALKRPFKCPTCGLRYINRMNFQRHWLVHLPEEDKRFKCDQCPLKFHFACLLKTHQLHHKEKSVQCPDCAACFALPYELYAHQRNNHQPDRVKPHKCEHCDKRFNKPSELKTHINSKHLNIKRKVLTEKRFKCEVCEKMCWSRIELQNHLERKHSGPKPTYRCDYCGREYLSKKMRDSHMSKVHESESGPLQCGICEASLLTKTDMRVHFQQTHSDHKCDQCDSGNAIEAHVHAHPNPEELTLHCDQCQEKFFDPVGLARHKRKEHFNDDPNKHPCGFCDFICSSENALTIHRRLKHNDQLLYTCEFCGSKFPSGIQLRDHRRRHLMSDDIPCKKCSKRFKTPQELRSHSLKCNSTNTEKGVYVCTECNRKHSSLSLHLKHVRLHKGDLPFECTLCQEKFPSRSKLRHHRDTDHKDELPKLKCTECSMTFSNETQRVKHAFSEHKPTSFNCNHCELKFSTTEEVRKHELTHFESSQLLSCEQCNEKFATKAELGMHRRRHRALTEPKFMCQICGKKYRFEKNLSSHSKIAHSGLELPPEGSEVSAIEHDYAKKTSLENPESSNEDSTTQTITDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-