Pmem013708.1
Basic Information
- Insect
- Papilio memnon
- Gene Symbol
- -
- Assembly
- GCA_003118335.3
- Location
- JAOPJP010000017.1:2470352-2480606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2e-05 0.001 19.7 1.3 1 23 261 283 261 283 0.99 2 12 0.025 2.2 9.3 4.5 1 23 291 314 291 314 0.94 3 12 2 1.7e+02 3.3 0.4 1 23 318 341 318 341 0.87 4 12 0.00086 0.075 13.9 2.1 2 23 417 438 416 438 0.98 5 12 0.0027 0.23 12.3 1.5 1 23 446 469 446 469 0.97 6 12 2 1.7e+02 3.3 4.8 1 23 473 495 473 495 0.97 7 12 3.2e-05 0.0028 18.4 4.6 1 23 500 523 500 523 0.98 8 12 0.0032 0.27 12.1 0.3 3 23 529 550 528 550 0.96 9 12 0.0097 0.84 10.6 0.8 2 19 570 587 569 590 0.93 10 12 9.4e-06 0.00081 20.0 0.9 1 23 662 684 662 684 0.98 11 12 2.4e-05 0.002 18.8 1.2 1 23 690 712 690 712 0.97 12 12 1.3e-05 0.0011 19.6 0.8 1 23 718 741 718 741 0.98
Sequence Information
- Coding Sequence
- ATGATAGATTTAAAAGCATGTGCAATATGTTTGACTACGGACACGGAATCCATTGACGTGAAATTTTATGATATGGATGTCGGGCTAAGAGTCGAATACAACATAGTGTCAGGATTACGAACAAGTAAAGGGGACGGCTTTCCTGGGTACCTTTGTTACGAGTGTTTCGCCTACGTAAAACGTTTCATAAAATTTAGAAGTAAATGCCAGAGAACCCATTATGCTCTTAAGCAACTTCTTGACAACAAGAAACAAGTAACTAAAGCCGCTATTGCTGTAATTGATCGTAAATTATTAAATGTAGAGCCATCCCTATCTTACTTAGAAAGCCATAGAACACATTATGAGCAAGTAAAGTTTAGATGGGTAAAGCACAACCGTTTCAGTGATGTGAAAGGTGATGTACCAATCATTCATCACAGTACTACGGAAAATGTCAAATTTGAAATACCCAAAAATGTCCATATTAAAGCTGAAATAGAAGATGCGGACAGTGAGCAAGATTTCAGCATACCTTTACCAGAGGAAATTAAGGAATCAGATGATATTGCAGTACCGCAGGAATACTCAAATGAAGAGAATGTATACCAAGAATACTTCACTAGTACCCCAGATAGTGATAATAATGATGTTGAAGTGATTAAAGAAAATAGTGAAATAAAAGAAGAGGTAGATGTAGATGGGTGTAGTTTAGACGAGGAGTATGCTAGTGTAGTACCAATTAATATGAATGAAGCGAAGGCTGCTGTGGAAGTATACAAAATGTTCAGTTCAGGGAAATATTCATGTAATGTATGTACAAAGTCATTCTATAATGAAAATCGACTGTTAGTACATATGAGAATGCATGATAAGCATATAAGTGGCACATATTGCTGTGAGTTATGTAATTATTATTATAAAACAGAATTTCTGTTAAAAACTCACATGACAGAAAAACATATGTACAAATATATATGTAGAAAATGCCCTGAAGTTAGTTTTGATAGAACCTCAGCAAAGCAACATTTTATTTGGTCACATTTACAAAAGGGGGACTCTAAAGACTTCAATTGGTATGAAACTCGGCCCACTTGGTTGAGTAAGCGAGGCATAAAGAGGCACAAAGGTGTGGTATCACTCCGTCCCATTCGCAAGATCACAAAGTTACCGGATGACTTCCTAGTTTACTCTCCAGTGGGACATGAAGAGCAGTACCAAATAGTGGGAGCGAGACAGACAAGTATGAATTATTTGGAAGCAAAACAAAAGTGTAATTTGTGCTACAAAGGTTTCCGAGAGATTGATACATATAATAAACATATGAAGAAACATAATCCAGAAATCTCCGGCCAGTTCCAATGTGACGTGTGCAAGCTTTACTTCAAGGATTTAAGGAAGATGTACAAACATATGATAATAACACATTTATACAAATATTCCTGTCAGATGTGCAGCTTTGTATGCTATAACAAGGGTCAAGCACATTTGCATTACAAGTGGCATAAAAATGTGACATACAAGTGTCAACATTGCGACAAAGTATTCAAGAAATCATCAACACGTCTAACTCATATAAGAATCAAGCATCCGTCGACTAATATATGTGAGTTGTGCGGACACAGCTTTGTCAGTGAGACGGGATTGTACTACCACAAGAGGATAGCGCACAGTAATGAGGAGATGGAGGTGAGTGAGGATGTGAAGGTGGACGTGACAGACGCGCTGTACTGCGCGGAGTGCAACATCTGCTTCAAGAACCAGGAGGCCTACAACACTCACTTTGGTAGCTCCAAGAACCACTCTACTACTAATTTGTCTGTGAACAATCACTTCAGAGAGACAAGGAAGCGTCGTATGACGCGACGTGACACCTCTGTCATCATCAACAACGGCCTGCCCACCGTCAGCAGATGTGAAGTCTGCGGCGACAATTTACAAAACGACGTGGCAGCTCGCAAGCACTACGAGGCGCAGCACCCCGGCGTCGACTACCTCAAGCGGTACATGTGCGACGTCTGCGGACACAAGACCAGGCAATACGCGAACCTTATGGTTCATATGCGCGTGCATACCAACGAGAAACCGTACCAGTGTCCGCACTGCGACAGGCGCTTCAGCATGCCCAGCAACAGGGACAGGCATCTCGTGGTGCACACTGGGGAGAAGCGGTACCAGTGTCAGTTGTGCAGCAGACGGTTCACACAGAGCAGCGCTGTCAAACTGCACATACAGACTGTGCACCTCAAGATACCGTACGCGCCCTGGGATAAGAAGAACAGGAAGCGGCGGCGCGAGGTGGAGGCTCCGCTGGCGATGCCGCCGCCGGTGCCGCAGAAAGTGGAACTAGACAACGTGGACTATCTGCACGCCTATATCTCTTATAATGACGAATAA
- Protein Sequence
- MIDLKACAICLTTDTESIDVKFYDMDVGLRVEYNIVSGLRTSKGDGFPGYLCYECFAYVKRFIKFRSKCQRTHYALKQLLDNKKQVTKAAIAVIDRKLLNVEPSLSYLESHRTHYEQVKFRWVKHNRFSDVKGDVPIIHHSTTENVKFEIPKNVHIKAEIEDADSEQDFSIPLPEEIKESDDIAVPQEYSNEENVYQEYFTSTPDSDNNDVEVIKENSEIKEEVDVDGCSLDEEYASVVPINMNEAKAAVEVYKMFSSGKYSCNVCTKSFYNENRLLVHMRMHDKHISGTYCCELCNYYYKTEFLLKTHMTEKHMYKYICRKCPEVSFDRTSAKQHFIWSHLQKGDSKDFNWYETRPTWLSKRGIKRHKGVVSLRPIRKITKLPDDFLVYSPVGHEEQYQIVGARQTSMNYLEAKQKCNLCYKGFREIDTYNKHMKKHNPEISGQFQCDVCKLYFKDLRKMYKHMIITHLYKYSCQMCSFVCYNKGQAHLHYKWHKNVTYKCQHCDKVFKKSSTRLTHIRIKHPSTNICELCGHSFVSETGLYYHKRIAHSNEEMEVSEDVKVDVTDALYCAECNICFKNQEAYNTHFGSSKNHSTTNLSVNNHFRETRKRRMTRRDTSVIINNGLPTVSRCEVCGDNLQNDVAARKHYEAQHPGVDYLKRYMCDVCGHKTRQYANLMVHMRVHTNEKPYQCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQLCSRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRREVEAPLAMPPPVPQKVELDNVDYLHAYISYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149038;
- 90% Identity
- -
- 80% Identity
- -