Basic Information

Insect: Papilio memnon
Gene Symbol: -
Assembly: GCA_003118335.3
Location: JAOPJP010000023.1:1444918-1450796[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 7.2e-05 0.0062 17.3 0.5 1 23 202 224 202 224 0.98

2 29 0.0014 0.12 13.2 1.3 2 20 256 274 255 276 0.93

3 29 2.4e-05 0.0021 18.7 0.4 3 23 306 327 304 327 0.96

4 29 0.0047 0.4 11.6 1.2 1 23 378 401 378 401 0.97

5 29 0.0099 0.86 10.5 0.2 1 23 420 442 420 442 0.96

6 29 0.00035 0.03 15.1 1.8 2 23 481 502 480 502 0.97

7 29 0.00085 0.074 13.9 4.0 2 23 541 563 541 563 0.97

8 29 5.6e-05 0.0048 17.6 1.5 1 23 613 636 613 636 0.97

9 29 0.00036 0.031 15.1 0.2 1 23 692 714 692 714 0.98

10 29 0.018 1.5 9.7 6.5 2 23 726 747 725 747 0.96

11 29 0.05 4.3 8.3 1.8 2 23 759 780 758 780 0.96

12 29 0.0051 0.44 11.4 1.1 1 23 790 812 790 812 0.98

13 29 0.0081 0.7 10.8 7.6 1 23 838 860 838 860 0.96

14 29 6e-06 0.00052 20.6 1.1 1 23 871 893 871 893 0.98

15 29 0.00036 0.031 15.1 1.0 1 23 901 923 901 923 0.96

16 29 0.00024 0.021 15.6 0.3 2 23 943 965 942 965 0.97

17 29 1 88 4.2 1.0 1 23 983 1005 983 1005 0.91

18 29 0.3 26 5.9 4.2 1 23 1012 1034 1012 1034 0.96

19 29 0.0072 0.62 11.0 2.7 2 23 1045 1067 1044 1067 0.95

20 29 0.00054 0.047 14.5 0.2 1 23 1089 1111 1089 1111 0.98

21 29 6.3 5.5e+02 1.7 5.9 2 23 1154 1176 1153 1176 0.94

22 29 0.0039 0.34 11.8 0.2 2 23 1192 1213 1191 1213 0.92

23 29 0.31 26 5.8 4.7 3 23 1221 1241 1219 1241 0.96

24 29 0.0058 0.5 11.3 1.0 2 23 1252 1274 1251 1274 0.95

25 29 2.7 2.4e+02 2.8 5.4 2 23 1291 1309 1291 1309 0.88

26 29 0.43 37 5.4 1.4 2 21 1313 1332 1313 1333 0.93

27 29 0.42 37 5.4 0.7 2 23 1382 1403 1381 1403 0.93

28 29 0.00022 0.019 15.7 0.1 2 23 1414 1436 1413 1436 0.95

29 29 8.7 7.5e+02 1.3 4.2 2 20 1474 1492 1473 1494 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	7.2e-05	0.0062	17.3	0.5	1	23	202	224	202	224	0.98
2	29	0.0014	0.12	13.2	1.3	2	20	256	274	255	276	0.93
3	29	2.4e-05	0.0021	18.7	0.4	3	23	306	327	304	327	0.96
4	29	0.0047	0.4	11.6	1.2	1	23	378	401	378	401	0.97
5	29	0.0099	0.86	10.5	0.2	1	23	420	442	420	442	0.96
6	29	0.00035	0.03	15.1	1.8	2	23	481	502	480	502	0.97
7	29	0.00085	0.074	13.9	4.0	2	23	541	563	541	563	0.97
8	29	5.6e-05	0.0048	17.6	1.5	1	23	613	636	613	636	0.97
9	29	0.00036	0.031	15.1	0.2	1	23	692	714	692	714	0.98
10	29	0.018	1.5	9.7	6.5	2	23	726	747	725	747	0.96
11	29	0.05	4.3	8.3	1.8	2	23	759	780	758	780	0.96
12	29	0.0051	0.44	11.4	1.1	1	23	790	812	790	812	0.98
13	29	0.0081	0.7	10.8	7.6	1	23	838	860	838	860	0.96
14	29	6e-06	0.00052	20.6	1.1	1	23	871	893	871	893	0.98
15	29	0.00036	0.031	15.1	1.0	1	23	901	923	901	923	0.96
16	29	0.00024	0.021	15.6	0.3	2	23	943	965	942	965	0.97
17	29	1	88	4.2	1.0	1	23	983	1005	983	1005	0.91
18	29	0.3	26	5.9	4.2	1	23	1012	1034	1012	1034	0.96
19	29	0.0072	0.62	11.0	2.7	2	23	1045	1067	1044	1067	0.95
20	29	0.00054	0.047	14.5	0.2	1	23	1089	1111	1089	1111	0.98
21	29	6.3	5.5e+02	1.7	5.9	2	23	1154	1176	1153	1176	0.94
22	29	0.0039	0.34	11.8	0.2	2	23	1192	1213	1191	1213	0.92
23	29	0.31	26	5.8	4.7	3	23	1221	1241	1219	1241	0.96
24	29	0.0058	0.5	11.3	1.0	2	23	1252	1274	1251	1274	0.95
25	29	2.7	2.4e+02	2.8	5.4	2	23	1291	1309	1291	1309	0.88
26	29	0.43	37	5.4	1.4	2	21	1313	1332	1313	1333	0.93
27	29	0.42	37	5.4	0.7	2	23	1382	1403	1381	1403	0.93
28	29	0.00022	0.019	15.7	0.1	2	23	1414	1436	1413	1436	0.95
29	29	8.7	7.5e+02	1.3	4.2	2	20	1474	1492	1473	1494	0.91

Sequence Information

Coding Sequence: ATGGCCCTCAAGCTCGGAAAATGTAGGCTCTGCCTCAAACTCGGCGACTTTTATTCCGTCTTCACTATGGATAACAACCTACAGCTCGCGGAGATGGTTATGGAATGCGCTCGAGTAAAGATATATGAAGGTGATGGTCTGCCAGACAAGATATGCTCAGAGTGTATACAGAAGCTAAGCAGTGCACATATATTCAAGCAGCAGTGTGAACGATCGGATCAGGAGTTGCGACGGAATTATGTTCCTCCACCTGGGTTCAGCGCCATACCCTCGCCCAAGAACAGGCAGAGCAGTGACTCGGCTTTCTCCAACAATACAGATGTGTCCATTAAGACTCAGGCCACAACATCACCAATGGACACAAAAGTATCTCCTGCCACTCGGAGCAGAAAGCGTAGTGCAGAAAGTGTCGATAATACGTCATCCAGTGGCCAATCCTATGACTACCGACCTACTTCTACCAAAAGAGTAGCGGAACTTCGGGTTGCAGAAAAAAGGCTAAAAAAATCTTTAAATTCAACTTACACAGACTCTGATTATGAAGACAATAGTGGGTCCCAGTTCTCGGTCGAAACTGACTCTGATGAACCATCGAAGAATGAATTCAAATGCAAAGTTTGTGGCAAAGAATTTGCCTCACAAAAAAGTGTGTCTGCACATTCCAAAGTGCATTTAAGGAAAAGTAACAAGAATGTCACAAACAACACACTGCAGCCTGTTGACAAGAAAGAAATGGAGAACGCAAACGATATTGAGGATAAGATGGAGTGCGAGAAATGTAACAAGAAATTCAAGTTGAAAATAATGTTGAAACGCCACCAAGACATGTGTGGTAAAGTAACAAATTCACCAATTAAAGAGTTGCAAGTGTCACTGGAGCCAATTGACTCTGTTTCCTCGCAAAATAAGATCAATTGTGATATGTGTTCAACTAAATTTAAAACAATAGAGAATCTGGAGAAACACATGAGAGTAGTCCATGCGGCAGTTCTTAAACCCGATAAATATGAGCATATAGTCGAAAATGGTGCCACTACTGTCCCTTGCTACTTCTGCGCGCAACCATTCGACGACTATAATGTTTATATCAAACACTTTGATACATGTTCAGAAAAGCGTGATGTTATCATTTTCACTTGTCCCGTCTGTCGCAAAGTTTTATCTAAAACAAGCACTTATTTTCTTCATATAAAAAATATGCATTTGTCTGTTAGTGGGAATTTAGACAAGAGTGTAGACGAACCTGTGGAAGGGTCATTTGAATGTCGCATATGTAGCAAGAAGATGGTGACGCAAGATCAGCTCATAAGTCATCTGGCAGGGCATATGTCCAACATGGGCGAAGAGGAAATGGCTGAAGTCAACATACGTGAAAGTCCTACAGACAATGTATCAGATTTAACAAACTACTCAAATTCTAATGTACCTTCTGGGCCTCTGAAGTGTAGCATGTGTGAGAAACGATTCACGTACAAGAAAGCCCTGGTCACACATGAGCAGAAGCACCTGGACGGAGAAATAGAGATTAAACAAGAGCCACAGGAGATGGACAGCAGTTTGCTAAGCGAGTCCAATCGTCAGTCCGAGTCAGAATCTAGCCAAGAAGAGGATGACGACAATACGTGCGATATTTGTGAGAAGCATTTTTCTTACAAGCGTCTCTTGATTCAGCATAAGAAGACCAAACACAATATGAGCTCAGGCACGCGTCGAGCCAAAATTAGCCTTAAAGACTGCAGCGTGAAGTGTCTCATCTGTGACATAGAAATGAAAGTGAGTGCAATAAACGAGCACAACCAAAAACACACAATTGTTAACATAAAGCCTCGTAACCTATATACATGTGCGGAATGCAATGAGAAGTTCAAGAGTTGCAGCTCGCTGGCCACGCACATCAAGCTGGTGCACCGATTGAAGCAGCCACAGGTGTCCAAGCTGCAGCGCGCTGAGTTGGCGGATTTTTGTGAGGTCGTCGTGACCAAGACGGAACCTCTGGCCTCGGGTCAGGGCCGCGACGACCTCGTGATGGTTCCGACGGTGTACGATTCCACTCCACTAGTCAATCTGACTGGCTTCACATGCCCCACCTGTGGCAAGCAGATGCCCACCTTAGTGTCGCTCAAGAGGCACATCAACTGGCATTCTAATGTCGGCAACAACATAGAAAAGATCTTGGAGTGCTTTGTCTGCAAAGAGAAATTCCGGTTCCAGTGCCACTATCGGGTGCACATGCGGCAACATTACAACGACACCACCTTGGATCCCGCGCTGCTCACCTGCACCATCTGCAACCGCAGGAGCAAACACCTTCGCGCCGCGCAGGCGCATATGAACTTCCACAAACAGACACGCTTCAAGAACAAGGATTACCAGTGCTCCATCTGCAAGAGAGTCTTCCAGTTCCGGAAGGTGTACCTGTCGCACATGGCGATACACTACAAGCGCGGCGATAGCGCCAACAACACCGTGGTCGGCATAGAGCCCGCCGCCACCCGCGCCGCCGTCGCCGGGCACACCTGCCACCACTGCGGCAAGATCTGCGAATCCGAGGTCTCGCTCAAGCACCACATCATATGGCACAAGTCCAAGACCTCGCTCTTCGGTGCCCGACACGAGTGCAATATCTGCGGTATTATGTTCACCAACAAGAGGACGTTAGAGTTGCACGTCCGATCTCATTACGAGGACGACAACGGCCCCTACAAATGTCCGATATGTGGCAAAGGTTTCACTGACGAAGTCTATCACAGGAAACACGTGAAGGGGCATAACTTTGATCACCAATCGCACCAGGCGAGGATAGCGAAGCTCAGGAAGGACAAAGTTAAGTGCCCCATTTGTAGCCGATTCTACCCCGACCTCGTGAAACTCATCCGGCATCTGCGGCGGACGCATCCCGAGAGCAAAATGATAAAGAACGATCCGGACGCGCCTCAGCAGAGCTACTTCTCGTGTAAACTGTGCGCCAAAGTGTTCCTCGACGAGCGCAGGCTGCAACACCACGAAGAGGCCCACCTGAGGAAGCCGGAACTCTTCAAGTGCAAGTTCTGCGGCAAAAAGACCATGTCGCTGAAGAATCACCGGGTACACATTAAAGGTCACTTGACACAAAAATATTTCGATGATCCCCTCAAATGCATGCATTGCGAGGAAACCTTCACGCGAGGATACGACCTACACTACCACCTGCGCGACGCGCACGGCATCACCGAGACCTGGATAGCGGAGCGCACCGAGCAGACTCTGAACGGACCTCTCAAAGAGTTCCAGTGCTCCATCTGCCTTAAGATACTCGCGAGCAAAGGCAACTTCGAGCGGCACATCGACTCCCACAACTCGCTAAGGTGCAACTACTGCTTCGATTACTTCAGCTCGCTGCGGTTCCTGGAGGGCCACCTCGCCTTCAGCTGCGACAAGAAGAAGCTCATCGGCGACACGGAGGTGCATCCGCGGAAAGTGAAGTGCCATATATGTTACAAAGCCTTTCATCTTCAAGTGAAACTGGACTGTCATCTGAGAACTCAGCATAATGTTAAAGTTTATAAAGAGGTGTCGGAAGGTAAAAAGGACATCGTTTGCGATTATTGCTTTAAAGTGTTTGAGAATGAGTACGCTCTGAGTACTCATAAGGTCTACCATCGCACGGTCGGCTTCTACGGCTGCCTGTACTGCAACCGAAAGTTCAACACGCTGACGGTGTTCAAGAAACATAAAAACCATCATTTTGCGCAGTTGAATGTCGACAACCCGACCAAGTGCGAACACTGCGATGAGACTTTTGTTGCGTTTAGAGAGTTCATATACCACATGAGGGACGTCCACGGGGACGACAAGGAATGGGCCGTGATGCCCAAGGAGTCGATAGAGGAGAAGTGCCATATTTGCAACAAAATATTTTTCAATCTCCACAAACATTTGGCCTATCACGAAGAGAATAGATGTAAAAAATGCTCAGAGTATTTCAATTCTCAGGTCGATTACGACAATCACCTGTGCGCGATAGAGAGCGACGAAGAGGTAGACAACACGAACGAAAGTGATTCTAAACCGAAATACGAGGAGTGCTCGTTCTGCTTCAAGCCCACAACGAAGAAGAACTCGAAGCGGCTGCACGATCACATCCACAAGGTGTCGGGATCCATCTCGTGCCGCTTCTGCTCGCTCAAGTTTAAAACTATCGACGCGTTCAACATCCACGCGTTCTCCCACCGCAGCAGGAAATATAACAAGAAGCCGATCAAGTGTCGAGAGTGCGGGGAGAAGTTCGTGCGCTACGGGCCTTTCATACGGCACATGAGGGCTGTGCACAAATGCAAGCAGAAGCTACACTACCGCGCCATGGTGCGCCCCGAACCCTGCGTCGTCTGCGGCGACCTCTTCCCCAACCTGCACAACCACTACCGCGCGCATCTTCAGAACCAGTGCCAGCTGTGCCGCAAGTACTTCACCTCGCATAAGGTGTTCTCGCTGCACCAATGCGACAAAGAGGATTCCAATCCATCGAAAGTGTTCACCTGCGACGAGAACCTCGTGGCCCTCATTAATTCGTACACGCCTCAAGACGAGAAAGACGACGAGAAATTTTACGGGCACAGCGACGATGACGACGAGATGGTCGTGGAGCCGAATATACTTGAAACTGATTACATTACTCAGGATGAGGAGAGTCAAAATTCCACAGATCTGAATATTCACGAAATGGTTCATGCGCCCATTATATCAGATGTTCTGTCGCTTTACCAGCAGAAGGAAGACACGGCGGATAACGTTGTCAACTTGGTGGACGACAACAGCGACAGTGAAGATATTGTAAACGTCATAACTATAGATGACTGA
Protein Sequence: MALKLGKCRLCLKLGDFYSVFTMDNNLQLAEMVMECARVKIYEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSAIPSPKNRQSSDSAFSNNTDVSIKTQATTSPMDTKVSPATRSRKRSAESVDNTSSSGQSYDYRPTSTKRVAELRVAEKRLKKSLNSTYTDSDYEDNSGSQFSVETDSDEPSKNEFKCKVCGKEFASQKSVSAHSKVHLRKSNKNVTNNTLQPVDKKEMENANDIEDKMECEKCNKKFKLKIMLKRHQDMCGKVTNSPIKELQVSLEPIDSVSSQNKINCDMCSTKFKTIENLEKHMRVVHAAVLKPDKYEHIVENGATTVPCYFCAQPFDDYNVYIKHFDTCSEKRDVIIFTCPVCRKVLSKTSTYFLHIKNMHLSVSGNLDKSVDEPVEGSFECRICSKKMVTQDQLISHLAGHMSNMGEEEMAEVNIRESPTDNVSDLTNYSNSNVPSGPLKCSMCEKRFTYKKALVTHEQKHLDGEIEIKQEPQEMDSSLLSESNRQSESESSQEEDDDNTCDICEKHFSYKRLLIQHKKTKHNMSSGTRRAKISLKDCSVKCLICDIEMKVSAINEHNQKHTIVNIKPRNLYTCAECNEKFKSCSSLATHIKLVHRLKQPQVSKLQRAELADFCEVVVTKTEPLASGQGRDDLVMVPTVYDSTPLVNLTGFTCPTCGKQMPTLVSLKRHINWHSNVGNNIEKILECFVCKEKFRFQCHYRVHMRQHYNDTTLDPALLTCTICNRRSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRVFQFRKVYLSHMAIHYKRGDSANNTVVGIEPAATRAAVAGHTCHHCGKICESEVSLKHHIIWHKSKTSLFGARHECNICGIMFTNKRTLELHVRSHYEDDNGPYKCPICGKGFTDEVYHRKHVKGHNFDHQSHQARIAKLRKDKVKCPICSRFYPDLVKLIRHLRRTHPESKMIKNDPDAPQQSYFSCKLCAKVFLDERRLQHHEEAHLRKPELFKCKFCGKKTMSLKNHRVHIKGHLTQKYFDDPLKCMHCEETFTRGYDLHYHLRDAHGITETWIAERTEQTLNGPLKEFQCSICLKILASKGNFERHIDSHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEVHPRKVKCHICYKAFHLQVKLDCHLRTQHNVKVYKEVSEGKKDIVCDYCFKVFENEYALSTHKVYHRTVGFYGCLYCNRKFNTLTVFKKHKNHHFAQLNVDNPTKCEHCDETFVAFREFIYHMRDVHGDDKEWAVMPKESIEEKCHICNKIFFNLHKHLAYHEENRCKKCSEYFNSQVDYDNHLCAIESDEEVDNTNESDSKPKYEECSFCFKPTTKKNSKRLHDHIHKVSGSISCRFCSLKFKTIDAFNIHAFSHRSRKYNKKPIKCRECGEKFVRYGPFIRHMRAVHKCKQKLHYRAMVRPEPCVVCGDLFPNLHNHYRAHLQNQCQLCRKYFTSHKVFSLHQCDKEDSNPSKVFTCDENLVALINSYTPQDEKDDEKFYGHSDDDDEMVVEPNILETDYITQDEESQNSTDLNIHEMVHAPIISDVLSLYQQKEDTADNVVNLVDDNSDSEDIVNVITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01146664;
90% Identity: iTF_01146664; iTF_01147539; iTF_01148989; iTF_01143998;
80% Identity: -