Pmem002618.1
Basic Information
- Insect
- Papilio memnon
- Gene Symbol
- -
- Assembly
- GCA_003118335.3
- Location
- JAOPJP010000021.1:1310274-1311515[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.55 1.1e+03 0.0 0.0 15 24 49 58 42 72 0.85 2 9 0.0028 5.9 7.3 0.1 12 43 99 127 95 128 0.85 3 9 4.3 8.8e+03 -2.8 0.4 18 28 178 188 169 196 0.72 4 9 0.41 8.6e+02 0.4 0.1 18 25 206 213 197 219 0.81 5 9 1 2.1e+03 -0.8 0.2 18 28 234 244 231 256 0.87 6 9 6.8e-06 0.014 15.7 0.6 12 43 258 286 244 287 0.83 7 9 0.002 4.2 7.8 2.5 5 26 280 301 280 303 0.91 8 9 8.9e-05 0.18 12.2 2.1 9 40 313 340 306 342 0.77 9 9 0.00054 1.1 9.6 2.6 11 39 341 370 338 373 0.76
Sequence Information
- Coding Sequence
- ATGAATTTCTTTGCAGGTGCAAAAAGTAGCACCGTCGAGGACACGTATAAGAAAACAGAAATCGCACGTAAGCTGTGTATAAAAAGACGGAATGTCGAATACGTACTTCAATATAGTAATGTTACCCCATTCATGTGGTATAAAGGGAAATATAGGTGCTTTTATTGTTCAGAACCAATGAAAGATCCAGATTTACTAAGAGAGCATACAACTAAAGTACATCAGTTTGCAAATTTAGAACTCGTTGTATTCGATAGGACAAAGAATAACAGAAATAGAGATGCAGCTGTTAAAATAGACGTGACAGATGTATCTTGTAAATTGTGTTTCAAACAAGTTAATAATCTAGAACAATTGATACATCATTTAATAATCGCACATGATGCGGAATATGATGTTAGTGTGCCTAACTGTCTTTTACCGTTCAAATTAGATAAGGATCAACCAACTTGTCCTATCTGCGATATGAAATTTGTATTCTTTGAGTATTTGTTACGTCATTCCAATAAACATCATCTATCCCATGATTATATATGTGATGTTTGTGGTACTAGCTTTCAAGGGGAAAATCATTTGAAAATGCATAACCGGTACTACCATAGACAAGGTGGGTATACTTGTGAGCATTGTGGCATATCACTGACTACACTATCAAAGAAAATATTACACGAGAAAAATGTACATATGGTTAACCTGTCAACTTGTCCACATTGTCCAGAGACGTTTAAGAGTCCTTATTTTAAAAAGTTGCACTTAGCTAATGTGCATGGTATTGAAGAGTTGAAAATCAAATGCCCGTATTGCCCTAAAGTTTATCCCCAAGAGAGTATAATGTCCCGACATATGAGAAGGGTGCATTTAAGAGAGAAAAACGTTGAATGTGAAATTTGTGGCGATAAATTTTTTGGTCCTTACGACGTGAAGTTACACATGTTAAAACATAATGGTGATAAGAAGTTTGTGTGTGCAGTTTGCGGGAAGAAATTCTCAAAGAAAAATAATTTAAACACGCATTTAATAACGCATACGGATAAAAAGTTTACGTGTGATATTTGTAATAAAGAATTCACTAATCAGCAGAATTTAAAAATACATAATAAACGACATTTAGTTCTTAATCAAAGTGAATCCGAACAAAATATTGTTGTTTTTGATGAATTGAATGACACTGAGATGATACAAATGGAGTTTGTGAACGACGAAATTGAAGGCGCAGAAttaactgggaaatatatacagtaa
- Protein Sequence
- MNFFAGAKSSTVEDTYKKTEIARKLCIKRRNVEYVLQYSNVTPFMWYKGKYRCFYCSEPMKDPDLLREHTTKVHQFANLELVVFDRTKNNRNRDAAVKIDVTDVSCKLCFKQVNNLEQLIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPICDMKFVFFEYLLRHSNKHHLSHDYICDVCGTSFQGENHLKMHNRYYHRQGGYTCEHCGISLTTLSKKILHEKNVHMVNLSTCPHCPETFKSPYFKKLHLANVHGIEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEICGDKFFGPYDVKLHMLKHNGDKKFVCAVCGKKFSKKNNLNTHLITHTDKKFTCDICNKEFTNQQNLKIHNKRHLVLNQSESEQNIVVFDELNDTEMIQMEFVNDEIEGAELTGKYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337941;
- 90% Identity
- iTF_01144010;
- 80% Identity
- iTF_01145437;