Pmac005730.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:278384-285315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.4 4.5e+02 1.3 0.1 2 23 490 511 489 511 0.87 2 9 0.0017 0.089 12.9 0.1 1 23 521 544 521 544 0.95 3 9 0.018 0.94 9.7 1.0 2 21 673 692 672 693 0.93 4 9 0.02 1.1 9.5 3.8 2 23 757 778 756 778 0.95 5 9 1.5 81 3.6 1.6 1 23 790 814 790 815 0.89 6 9 1.8e-05 0.00097 19.1 0.3 2 23 821 844 820 844 0.97 7 9 0.039 2.1 8.6 0.2 1 23 850 872 850 872 0.93 8 9 0.0012 0.064 13.4 3.3 1 23 878 900 878 900 0.98 9 9 0.8 43 4.5 0.0 2 20 911 929 910 931 0.86
Sequence Information
- Coding Sequence
- ATGGAGAAGAAGTATCCCTTAGTATTGGACCCAATGATGATTTCCAAACATTCCTGGATAAAGCCAAtatttttctatttcagaTCAACCCTAGGTTTCGATGTAGACATTAATTCAATTACTGGCGAACAACCTGTatcattaaatgaaaacatttatcattatCTCCTGAACTCGGAACTAAATTATCAAACTGATCCACAAATTGGTACTGAAAATTTCCAACGCACACCAGAACAGGGTGCACATAGCCCTGATGGGTTTGTGTACGTTTTAGACGACGGCACACAAATACGAGCATCgcaaatacattttgataaCGAGGATCCCCCTTTAGACCTCATAGCGGAACAAATACCATTCGTCAAGTACGCCGATGATAGTGAAGATGAAAACGAAGTCGTAGACCAAAGTAttgaaaatactaaaaaaataaacatcgtcGAAAGTCCTGTTAAACGTTGGGAAAGTAGAAATTCCAGTCCTAGATGCAGTTTCGTAAACAGTTTACCTTTCAAACTTGTCTGTTCGAATACCTCTAACTTTGAAGCCCAATTCACAAAGTACTTAGAATCAAGTACTACGAGAACATTCACGACTTTGAATCCTGTAACCAATAGAAACAAGTCCCctaaaagtttaataagtgacaattacaaaaattacgaTGAAAATTATCAACGTAACAAAGATGATTTCGGAAGTTATACACGAGAAGAAAttcttaatatgtttaaagatTCACCCGTCGCATCCTTGCCTTACGAAGAGAACCAAAATCATAACGAAAAAAGACGCCATGTACGTAAAACCGACCCATCTCGGCTTCATAAAAATTGGAATAATCGACCTTACGTAGACGTAAAACCTGGAGAGAAAGGTAGACAAAACTGTTTCATTTGTGGCAAAATCGATAACAACATAGAAAAGTTGTACTTGTTTGATAACGAGGATCAAAAACTACATAGATGTACATCGCCCAGAAATTATCCgactcaattaaaaataatatgtgacCATTGTTTGgctgaaaattttaaacctAGTCGTATGAAAAGTCCTACACAATCTCTTAGTACCGATGAGTTCTTAGTTATCAAAAATAACcagcaatttatatttcaaaaggttattgattttaaattggcTCCGATTTCGGATATCGCAGATAAACGGGATCAAAACCTCGAGGATACCCAAGAGAATGAAAAACTTGAATTTGTGAAAGTAGAAATAGGTTCCGACGGAGAAATCGTAACGAAATGTATTGACAATGATACAAGGTCATCAGATGACGTTATTATTGTGAAAGATGAGAAAAAAGATAGTTCAAGTGATGttgaaataatagaaaatgaaCCTTATATAGACGATCATATTATAGATAATCTGGAAGAAGCAGATGAGGACGTTAAAGAATTTTTGGGGAAATATCATTGTGATAATAATACTGAGATTAAGGAATTAAAATGCAGGTTTTGTGACAGCATCTTTGAACAAATCGGCCAGGTTATAGACCATGGCGAGGAacacaaacataatttaaacgaTGGAGAAGTATTCCCTTGTCCATTGTGCGACTATggttattctaattttaaatggttAAAGGGACATCTCAAAGCAGCTCATGACAAGACAAAAATTACTGACATAAAAAACGAAGCTGATAACGATGAAGACAAAAatGAGGCTAAAACTTCTCCATCTTCATCTCCCGTTGCGAAGAGAACTAGAAgtgcaattaaaaaagtcGAAACGGAAACCGAAAAAGGTGTGGAAATTATGGACAATTCTAAATTCAGTGGTCATAACAGTGAGTTTCATTGCcgaaacatACTgAACGGTTCTACATTGACTGTCAATACTGAAGTGAAACAGGAATGTTTAGACAGCAGTGATGATGAAGCAATCTGGATCGTGCAGACTGTTGGCCATGAGCCCTCGGCACAGCTGGAGAACTTACTGAAGGTGGCCACGgGCGAAGACAAAGATGAGAAAaacagaaagaaaaataaatgtaacaactgcagTCAAATATTCCCAACTGCGGAGAGTCTTATCTCTCACAAGTGTCGTCGCCGAGGACGCAAGCGCAGGGGCCCGGCCAAAGATGATTCGGTCTTACTCGTTCCCTCTGAAGAGGACTTTCTTAggaggGCTCAAGGTAGACCTAAACAAAAACAGTCAGGAGTTGACAACGATTTGCTAGTTGttAGATCTCGTAAGAGAAAGAACCGTGAGCCGACTTCTGATCCGCAAATAGTTACCTGTCACAACTGCAATGAATCGTTTACCTCCAAAGTTAGACTGAAGTTTCATATGCAATTCCACGACGCGACTAATCTTTTGACTGCGGAGGGTCAATACGCTTGCCCAGAGTGCGAGGGTGCGCATTTCCCCACTGAAAGCGAGCTCTTCGACCACGTCCACTTTCAGCATCATAAGCAGAAGCGCTGGCAATGTCCTGTAGAAGATTGCGGCAAGACTTTTTATCTTAGAGCTACGTTAACAAAACATAGCCGCACGCATACAGACACGCGACGATACGTATGCGTAACGTGCGGGAAACGATTCCTTGACAAGCAAACCCTCGACGAGCACGGAGTCACACATTTACAAATAAAGCCGTTCCAGTGCCACATCTGCTTGAAGCAGCTGACACGACGATCTCGTCTCCGGATGCATCTCCGAGCGCACGAGGAGGAGCTCGCACCGCGGCTTGTGCTCGTCTGCGCCGCGTGCGGTCGCGCCTTCCGCGATACTAATGACGCTCAGGATCACGCTAATAAATCAAAAGAGTGTATAGAGAAGTTAAGTCCGGCTGTTAAAGAAGAGAACCAAGTATCAGTCCTGCTTTCCCCGACCACTGGACTGGTCACTCAAACTGTTGCGGTTGTTGCGAAGTCCCCGCAAATGGAGTGCGGACCGGAAGGTGACGCGTTACTGGCAACACTCACAGACTTCGCCAAAATCATCATACGAGTTGTCGAGATTGAGAAGGCATTCCGCTGCGAGTACTGTGAAGAGTATGTATAA
- Protein Sequence
- MEKKYPLVLDPMMISKHSWIKPIFFYFRSTLGFDVDINSITGEQPVSLNENIYHYLLNSELNYQTDPQIGTENFQRTPEQGAHSPDGFVYVLDDGTQIRASQIHFDNEDPPLDLIAEQIPFVKYADDSEDENEVVDQSIENTKKINIVESPVKRWESRNSSPRCSFVNSLPFKLVCSNTSNFEAQFTKYLESSTTRTFTTLNPVTNRNKSPKSLISDNYKNYDENYQRNKDDFGSYTREEILNMFKDSPVASLPYEENQNHNEKRRHVRKTDPSRLHKNWNNRPYVDVKPGEKGRQNCFICGKIDNNIEKLYLFDNEDQKLHRCTSPRNYPTQLKIICDHCLAENFKPSRMKSPTQSLSTDEFLVIKNNQQFIFQKVIDFKLAPISDIADKRDQNLEDTQENEKLEFVKVEIGSDGEIVTKCIDNDTRSSDDVIIVKDEKKDSSSDVEIIENEPYIDDHIIDNLEEADEDVKEFLGKYHCDNNTEIKELKCRFCDSIFEQIGQVIDHGEEHKHNLNDGEVFPCPLCDYGYSNFKWLKGHLKAAHDKTKITDIKNEADNDEDKNEAKTSPSSSPVAKRTRSAIKKVETETEKGVEIMDNSKFSGHNSEFHCRNILNGSTLTVNTEVKQECLDSSDDEAIWIVQTVGHEPSAQLENLLKVATGEDKDEKNRKKNKCNNCSQIFPTAESLISHKCRRRGRKRRGPAKDDSVLLVPSEEDFLRRAQGRPKQKQSGVDNDLLVVRSRKRKNREPTSDPQIVTCHNCNESFTSKVRLKFHMQFHDATNLLTAEGQYACPECEGAHFPTESELFDHVHFQHHKQKRWQCPVEDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELAPRLVLVCAACGRAFRDTNDAQDHANKSKECIEKLSPAVKEENQVSVLLSPTTGLVTQTVAVVAKSPQMECGPEGDALLATLTDFAKIIIRVVEIEKAFRCEYCEEYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01147697;
- 90% Identity
- iTF_01139254;
- 80% Identity
- -