Pmac010883.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:213890-215968[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0083 0.44 10.7 1.0 2 23 235 257 234 258 0.92 2 10 0.064 3.4 7.9 2.2 2 23 264 285 263 285 0.95 3 10 0.00089 0.048 13.8 1.5 1 23 291 314 291 314 0.96 4 10 0.00023 0.012 15.6 0.0 1 21 320 340 320 341 0.95 5 10 2.9e-06 0.00015 21.6 1.2 2 23 363 384 362 384 0.96 6 10 0.00045 0.024 14.7 2.5 1 23 388 410 388 410 0.95 7 10 0.00022 0.012 15.7 3.4 1 23 416 438 416 438 0.97 8 10 2.5e-05 0.0013 18.7 1.8 1 23 444 466 444 466 0.98 9 10 0.14 7.5 6.9 1.5 1 23 472 494 472 494 0.80 10 10 3.7 2e+02 2.4 0.1 12 23 507 519 503 519 0.82
Sequence Information
- Coding Sequence
- ATGGATGTAGAGACTGAAACTTACTACCTTTGCATGCTATGTGTCCAGCTAGAATGCAAAGGCAATTTAATCCAATTACAAGCAGACGAAGAGGTGTTACACAAAACTATGGCAAAATTATCACGCTTAAACATTTGGTACGATTATGGCGAAATATTTCCGAAATATGTTTGTCAATCGTGTAACGATAATGTTGATAAAGCCTTTGAATTCGtttcaaaaattgaaaacgcccacaaaactttatttgatctttatacaaataaaaacaactgcaTAATAGAGCAAGATTCTGATATTTcagaaaatgaaaaagatataattttaatttcggaAAATGAAGAGCATGATATTAATGAAGACCAACAATGTtatgttttagaaaataatcaattttctGATGATCAACAGAATCATGTTTTGGATCTTCAACAGAATGGTTGTTTGGAACATCAACAGGAAGATATTTCTGAATACCAACAGATTGAAATTTTGGAACATCAACGGAGTGAAATTGCAGAACATATGGATCCTATTAGAGATAAATCTGATTGTGGTTCAGGACTAGACTTTGAAATGAACCCTCAATCTTCAGACAACAACTCCATTATCTCGGAGAACTCTAATTGGCTAAATATTTCCTGTAATACAAACAATAGCGAGAGCACATACACAAGATTAACCTGGAATGATTACCTATGGAGCTGTTCTATATGTGAAACACAGTTTTCTACAATTGAAGAGTTAAAACTACATTCAATGCAATTCCACCACATATGTAATGCATTGAAGTGTCAtcattgtaacaaaacaatattatctttaaatgaattaattgtACATGTTCAATCGCATAATGAACATCTTAAATTTATGTGCTAcaaatgtaattgtaatttttcaaatactcCTGAACTAAATAATCATATAGAAATAGAACATGGCTCTAAAACACAATATGTATGTCCTGGCTGCAATACTGATTATGAAAATTCAGAAAAATTACAAGTTCATATGGATACATACTATAGaggaaaacaatcaaaacatgTACCTAAAGAGTTGGTCTCTAACCAAAACAGCTTGTCCtgtgaaatttgtaaaaagtcATTCAAAAACAAGCAATTGCTCAACAATCatttatctatacatacaAAAGAACATATGTGTGATAAGTGTGGTGAAGGttttttcagtaaaaaacaattaaaatccCATTCAATATCACATGAAGAGAAACTATCACATGAGTGTAGTGTATGCAAGagtagttttaaaacattgcagcatttaaaaaatcatatagcCGTACATAGTAGCGAGAAGCCTCATAAGTGTGATCAGTGCGGAAAAGAATaccgtttaaaaaaacaactcaaTTCACATATTATAATACACAACAACTCACTACAATATGACTGTATGTATTGTGACAAAAAGTTTAGGTTGAAAACTATTCGAGACCAACATATAAGGCAGCATACCGAATTCAAACCAAATACAACTGAAATCTGTGCTAGGGGttctaaatataacaaacatatgAAAAGGCGTCATGATTTGAATATGGCCAAGAAAAAAAGGACACCAGAAGGTGTGTATCCAAATAATCCATCTAcaggtaaaataataaagtgcaAAGGAAAGGAAAAGGAAACTCTGGAACCAAAAAATAGGAATGGTAAAGGTAAAGCTAAGAGGATGTCATATAgcactaaacaaaaataa
- Protein Sequence
- MDVETETYYLCMLCVQLECKGNLIQLQADEEVLHKTMAKLSRLNIWYDYGEIFPKYVCQSCNDNVDKAFEFVSKIENAHKTLFDLYTNKNNCIIEQDSDISENEKDIILISENEEHDINEDQQCYVLENNQFSDDQQNHVLDLQQNGCLEHQQEDISEYQQIEILEHQRSEIAEHMDPIRDKSDCGSGLDFEMNPQSSDNNSIISENSNWLNISCNTNNSESTYTRLTWNDYLWSCSICETQFSTIEELKLHSMQFHHICNALKCHHCNKTILSLNELIVHVQSHNEHLKFMCYKCNCNFSNTPELNNHIEIEHGSKTQYVCPGCNTDYENSEKLQVHMDTYYRGKQSKHVPKELVSNQNSLSCEICKKSFKNKQLLNNHLSIHTKEHMCDKCGEGFFSKKQLKSHSISHEEKLSHECSVCKSSFKTLQHLKNHIAVHSSEKPHKCDQCGKEYRLKKQLNSHIIIHNNSLQYDCMYCDKKFRLKTIRDQHIRQHTEFKPNTTEICARGSKYNKHMKRRHDLNMAKKKRTPEGVYPNNPSTGKIIKCKGKEKETLEPKNRNGKGKAKRMSYSTKQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -